Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1870 ATGGAACTTCATTCTAAATACCAAGTAGTCCTTGTGTGTATGATGTTGCTCTTACCCACACTATGTACCTCCCAAGACTTTACATCCTCCAGAGCTACCTATTATGGTAGCCCTGATTGCTATGGAACTCCAAGGGGAGCTTGTGGTTATGGCGAATACGGAAGAACTGTGAACGACGGGAGTGTTGCCGGCGTGTCTGGGCTCTGGAAGAACGGCTCTGGCTGCGGTGCTTGCTACCAAGTGAGGTGCAAGAACGCACAAGTATGCGATGAATATGGGACGTACGTGGTGGTGACTGACTACGGTGAAGGAGACAGGACAGACTTTGTGATGAGTCCACGTGCCTACGCGAGAATGGGAAAGAATCCAGACGCATCAGAGGAGCTGTTTAAATACGGCGTCGTAGAGGTGGAATACAGGAGGATTCCCTGCAGGTATGGGGCATCCAACGTAGTGTTCAGAGTACAGGAGCAAAGCTCATACCCTAACTACATCGCCATTCTGGTGCTGTACGTGGCTGGCCGAAACGACATCACAGCCGTTGAGGTGTTTCAGGAGGATTGCAAGCAGTGGAGGCCGTTGAGGAGGGCGTACGGAGTGGTGTTTGATGCCGAGAACCCACCACGTGGCGAATTGATGCTGAGGTTCCAGGTGAGCGGGCGTGGGGGTGTGTATTGGGTTCAGGCCAAGAATGCTATTCCCAGTGACTGGAAGGCTGGACAAGCTTATGACTCTCAAGTTCAGCTAGATTAG 753 0.5193 MELHSKYQVVLVCMMLLLPTLCTSQDFTSSRATYYGSPDCYGTPRGACGYGEYGRTVNDGSVAGVSGLWKNGSGCGACYQVRCKNAQVCDEYGTYVVVTDYGEGDRTDFVMSPRAYARMGKNPDASEELFKYGVVEVEYRRIPCRYGASNVVFRVQEQSSYPNYIAILVLYVAGRNDITAVEVFQEDCKQWRPLRRAYGVVFDAENPPRGELMLRFQVSGRGGVYWVQAKNAIPSDWKAGQAYDSQVQLD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1870 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Acco11g1870 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Acco11g1870 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Acco11g1870 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Acco11g1870 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Acco11g1870 250 Gene3D - 147 249 IPR036749 -
Acco11g1870 250 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Acco11g1870 250 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Acco11g1870 250 PRINTS Major pollen allergen Lol pI signature 63 74 IPR005795 GO:0005576|GO:0019953
Acco11g1870 250 PRINTS Major pollen allergen Lol pI signature 154 169 IPR005795 GO:0005576|GO:0019953
Acco11g1870 250 Pfam Expansin C-terminal domain 151 234 IPR007117 -
Acco11g1870 250 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Acco11g1870 250 Gene3D - 18 145 IPR036908 -
Acco11g1870 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Acco11g1870 250 CDD DPBB_EXLB_N 28 144 - -
Acco11g1870 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Acco11g1870 250 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
Acco11g1870 250 PANTHER EXPANSIN-B3 14 248 - -
Acco11g1870 250 Pfam Lytic transglycolase 62 139 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1870 Acco-ChrAcco11 32990164 32991328 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1870 4 249 Expansin Gene Family AT4G17030 59.677 7.95e-110 315