Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1868 ATGGGGCTTCATTCCAAATACCAAGTGGTCCTTGTTTGTGTGTTGCTCTTGCCTGCTCTATGCCTCTCCCAATTCACAGACTCTAGAGCCACTTTTTACACCAGACCCGATGGTGGTGGTACCCCAACTGGAGCTTGTGGATTTGGAGATTACGGTAGGACTGAAAACTCAGGGAGGGTGGCCGGAGTGTCTGATGCGCTATGGAGAGGCGGCGCTGGATGCGGTGCCTGCTACCAAGTAAGGTGCAAGGATACACAATTATGCAGTCCGGACGGGGTAACTATAGCGGTAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTCATGAGTTTTAATGGTTTCTTCAGACTTGGAGTGAACTCAACTGCTTCGGAACAGCTCGTGAAGAACGGCACCGTTGATATCCAGTACAGGAGGGTCCCCTGCATTTTCGATGGATCCAACGTTAAGATCAAGATCAACGAGAACAGCAGAATCCCTGACTACCTCGCTATTGCTGTCATCTACGTTCCTGGCTCCAACGACGTCGTTTCCGTTCAGATATCCAACAATAATGGGAGAGACTGGAAACCATTGAGAAGAGCTTTTGGGGCAGTGTTTGATATACCAAATCCGCCACGTGGACCGTTTAAGTTGAGAGTGCGATTCAGGGGAAGCCCGCTTTGGGTGGTATCGCCCAACAATGTGATTCCAGCTGACTGGAAGGTTGGAGCTATTTATGACACTGGAATTCATGTAAATCGTGCGACATCGTAA 759 0.4941 MGLHSKYQVVLVCVLLLPALCLSQFTDSRATFYTRPDGGGTPTGACGFGDYGRTENSGRVAGVSDALWRGGAGCGACYQVRCKDTQLCSPDGVTIAVTDMGSGDRTDFVMSFNGFFRLGVNSTASEQLVKNGTVDIQYRRVPCIFDGSNVKIKINENSRIPDYLAIAVIYVPGSNDVVSVQISNNNGRDWKPLRRAFGAVFDIPNPPRGPFKLRVRFRGSPLWVVSPNNVIPADWKVGAIYDTGIHVNRATS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1868 252 Gene3D - 145 247 IPR036749 -
Acco11g1868 252 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Acco11g1868 252 Gene3D - 19 143 IPR036908 -
Acco11g1868 252 CDD DPBB_EXLB_N 26 143 - -
Acco11g1868 252 SUPERFAMILY Barwin-like endoglucanases 11 145 IPR036908 -
Acco11g1868 252 SUPERFAMILY PHL pollen allergen 149 242 IPR036749 -
Acco11g1868 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 148 IPR007112 -
Acco11g1868 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Acco11g1868 252 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Acco11g1868 252 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Acco11g1868 252 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Acco11g1868 252 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Acco11g1868 252 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Acco11g1868 252 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Acco11g1868 252 Pfam Lytic transglycolase 62 138 IPR009009 -
Acco11g1868 252 PANTHER EXPANSIN-B3 15 245 - -
Acco11g1868 252 SMART dpbb_1 60 138 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1868 Acco-ChrAcco11 32974221 32976140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1868 4 245 Expansin Gene Family AT4G17030 47.368 4.55e-75 226