Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1867 ATGGTCAACAGTGGCCACCAGCCGTCCATTGAAATGCGATCGCACAGAAAAATGGGGCTTCATTCTAAATACCAAGTGGGCCTTTTGTGTGTGATGATGATGCTCTTACCAGCCGCACTATGCTACTCCCAAGGTTTCACTCCCTCCCGAGCTGCCTATTATACTACCTCTGATGGCTATGGAACTCCAAGTGGAGCTTGTGGATACGGCTATTATGGGAGAAGTGTAAACAATGGCAAGGTGGCTGCTGTGGCTGGGCTCTGGAGGAATGGCGCTGGATGCGGTGCTTGCTACCAAGTAAAGTGCAAAAATTCAAGGTTGTGCAGTGATTATGGAACGATGGTGGTGGCAACAGACTACGGCGCAGGAGACAGAACTGACTTCATTATGAGTCCAAATGCCTTCAAAGGTATGGGACGAAACCCAAGTGCATCGGCCGAGCTCAAGAAATACGGCGTCGTTGACATCGAATACAGGAGAGTGCCTTGTACATACGAAGGTTACAACGTGCGTATCAAGATCCACGACTCCAGCAATTACCCAAACTACCTTGCTATTGTCATTCTCTACGTGCCTGGCATGAACGACGTCACAGCCGTTGAGATCTATGATAATGAGCGCCATGAATGGAAGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATGTAGTTGGCGCACCAAGTGGACCATTGATGCTGAGGTTGCAATTCAGTGGAAGAAAGGGTTGGGTTCAGTCCTCCAAGCGTGCCATTCCTAGAGATTGGAAGATTGGAGCTTCTTATGATTCTCAAGTTCATGTCTAA 804 0.4876 MVNSGHQPSIEMRSHRKMGLHSKYQVGLLCVMMMLLPAALCYSQGFTPSRAAYYTTSDGYGTPSGACGYGYYGRSVNNGKVAAVAGLWRNGAGCGACYQVKCKNSRLCSDYGTMVVATDYGAGDRTDFIMSPNAFKGMGRNPSASAELKKYGVVDIEYRRVPCTYEGYNVRIKIHDSSNYPNYLAIVILYVPGMNDVTAVEIYDNERHEWKPMRRAYGAVFDVVGAPSGPLMLRLQFSGRKGWVQSSKRAIPRDWKIGASYDSQVHV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1867 267 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Acco11g1867 267 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Acco11g1867 267 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Acco11g1867 267 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Acco11g1867 267 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Acco11g1867 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Acco11g1867 267 Pfam Lytic transglycolase 82 158 IPR009009 -
Acco11g1867 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 168 IPR007112 -
Acco11g1867 267 PANTHER EXPANSIN-B3 35 266 - -
Acco11g1867 267 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Acco11g1867 267 Gene3D - 164 264 IPR036749 -
Acco11g1867 267 Pfam Expansin C-terminal domain 170 252 IPR007117 -
Acco11g1867 267 CDD DPBB_EXLB_N 49 163 - -
Acco11g1867 267 Gene3D - 36 163 IPR036908 -
Acco11g1867 267 SUPERFAMILY Barwin-like endoglucanases 32 167 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1867 Acco-ChrAcco11 32970341 32972679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1867 21 265 Expansin Gene Family AT4G17030 50.000 2.38e-80 241