Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1864 ATGGGGCTTCATTCTAAATACCAAGTGGTCCTTGTTTGTGTGTTACTCTTGCCTGCTCTATGCCACTCCCAATTCACAGACTCCAGAGCCACCTTTTACACTAGACCCGGTGGTGGTGGAACCCCTACTGGAGCTTGTGGATTTGGCGATTACGGGAGGACTGAAAACTCAGGGAGGGTGGCTGGCGTGTCTGGGCTATGGAGAGGCGGCGCTGGTTGCGGTGCATGCTACCAAGTAAAGTGCAAGGACACAAAATTATGCAGAAAGGATGGGGTAACGATAGCGGTAACAGACATGGGTTCAGGAGACAGAACAGACTTCGTTATGAGTCTTAACGGTTTCTTAAGACTTGGGGTGAACTCAACTGCTTCGGAACAGCTCAAGAAGAACGGCACCGTTGATATCCAGTTCAGGAGGGTCCGATGCACTTTCGATGGATCCAACGTTAAGATCAAGATCAACGAAAACAGCAGATTCCCACAGTACCTCGCTATCTCTGTCATCTACGTGCCTGGCATCAGGGACGTCGTTTCCGTTCAGATATCCAACAATAATGGGAGAGACTGGAAACCATTGAGAAGAGCTTTTGGGGCAGTGTTTGATATACCAAATCCGCCACGTGGACCGTTTAAGTTGAGAGTGCGATTCAGGGGAAGCCCGCTTTGGGTGGTATCGCCCAACAATGTGATTCCAGCTGACTGGAAGGTTGGAGCTATTTATGACACTGGAATTCATGTAAATCGTGCGACATCGTAA 756 0.4921 MGLHSKYQVVLVCVLLLPALCHSQFTDSRATFYTRPGGGGTPTGACGFGDYGRTENSGRVAGVSGLWRGGAGCGACYQVKCKDTKLCRKDGVTIAVTDMGSGDRTDFVMSLNGFLRLGVNSTASEQLKKNGTVDIQFRRVRCTFDGSNVKIKINENSRFPQYLAISVIYVPGIRDVVSVQISNNNGRDWKPLRRAFGAVFDIPNPPRGPFKLRVRFRGSPLWVVSPNNVIPADWKVGAIYDTGIHVNRATS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1864 251 SUPERFAMILY PHL pollen allergen 148 241 IPR036749 -
Acco11g1864 251 Pfam Lytic transglycolase 60 136 IPR009009 -
Acco11g1864 251 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Acco11g1864 251 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Acco11g1864 251 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Acco11g1864 251 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Acco11g1864 251 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Acco11g1864 251 Gene3D - 18 143 IPR036908 -
Acco11g1864 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 242 IPR007117 -
Acco11g1864 251 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Acco11g1864 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Acco11g1864 251 PANTHER EXPANSIN-B3 14 244 - -
Acco11g1864 251 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Acco11g1864 251 Gene3D - 144 246 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1864 Acco-ChrAcco11 32946874 32948990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1864 4 244 Expansin Gene Family AT4G17030 44.534 3.62e-69 211