Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1863 ATGGGGCTTCATTCTAAATACCAAGTGGGTCTTGTGTGTGTGATGATGCTGTTACCAGCTGCACTATGTTACTCCCAAGGCTTCACTCCCTCCCGAGCTGCCTATTATGCTACCTCTGATGGCTATGGAACTCCCAGTGGAGCTTGTGGATACGGCTATTATGGTAGAAGTGTAAATAATGGGAACGTGGCAGCTGTGGCTGGGCTCTGGAGGAATGGCGCTGGATGCGGTGCTTGCTACCAAGTAAAGTGCAAAAATTCAAGGTTGTGCAGTGATTATGGAACGATGGTGGTGGCAACAGACTACGGCGCAGGAGACAGAACTGACTTCATTATGAGTCCAAATGCCTTCAAAGGTATGGGACGAAACCCAAGTGCATCGGCCGAGCTCAAGAAATACGGCGTCGTTGACATCGAATACAGGAGAGTGCCTTGTACATACGAAGGTTACAACGTGCGTATCAAGATCCACGACTCCAGCAATTACCCAAACTACCTTGCTATTGTCATTCTCTACGTGCCTGGCACGAACGACGTCACTGCCGTTGAGATCTATGACAATGAACTCCATGAATGGAAGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATATAGTTGGCGCACCAAGTGGACCATTGACTCTGAGGTTGCAATTCAGTGGAAGAAAGGGTTGGGTTCAGTCCTCCAAGAGCGCCATTCCTGGAGATTGGAAGATTGGAGCTTCTTATGATTCTCAAGTTCATGTCTAA 750 0.4853 MGLHSKYQVGLVCVMMLLPAALCYSQGFTPSRAAYYATSDGYGTPSGACGYGYYGRSVNNGNVAAVAGLWRNGAGCGACYQVKCKNSRLCSDYGTMVVATDYGAGDRTDFIMSPNAFKGMGRNPSASAELKKYGVVDIEYRRVPCTYEGYNVRIKIHDSSNYPNYLAIVILYVPGTNDVTAVEIYDNELHEWKPMRRAYGAVFDIVGAPSGPLTLRLQFSGRKGWVQSSKSAIPGDWKIGASYDSQVHV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1863 249 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Acco11g1863 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Acco11g1863 249 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Acco11g1863 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Acco11g1863 249 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Acco11g1863 249 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Acco11g1863 249 PANTHER EXPANSIN-B3 18 248 - -
Acco11g1863 249 Pfam Lytic transglycolase 64 140 IPR009009 -
Acco11g1863 249 Gene3D - 146 246 IPR036749 -
Acco11g1863 249 CDD DPBB_EXLB_N 31 145 - -
Acco11g1863 249 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Acco11g1863 249 Gene3D - 18 145 IPR036908 -
Acco11g1863 249 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Acco11g1863 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 245 IPR007117 -
Acco11g1863 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1863 Acco-ChrAcco11 32941989 32943299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1863 4 247 Expansin Gene Family AT4G17030 49.798 2.13e-81 243