Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1861 ATGGAACTTCATTCTAAATACCAAGTAGGCCTTGTGTGTGTGATTTTGCTCTTACCCATACTAAGCACCTCCCAAGACTTCACATCCTCCAGAGCTACCTATTATGGTAGCCCTGCTTGCTATGGAAGTCCAAGGGGAGCTTGTGGATATAGCGAATACGGAAAAACTGTGAACGACGGCAGTGTCGCCGGCGTGTCTGGGCTCTGGAAGAACGGCTCTGGCTGCGGTCCTTGCTACCAAGTGAGGTGTAAGAACTCACAAGTATGCGATGAATATGGGACGTCCGTGGTGGTGACGGACTACGGTGAAGGAGACAAGACAGACTTTGTGATGAATCCACGTGCTTACGCGAGAATGGGAAGGAATCCAGACGCATCACAGGAGCTGTACAAATACGGCGTCGTAGAGGTGGAATACAGGAGGATTCCCTGCAGCGACATCACAGCCGTTGAGGTGCTTCAGGAGGATCACCAGCAGTGGTGGCCGTTGAGGAGGGCGTACGGAGTGGTGTTTGATGCCGAGAACCCGCCACGTAGCGATTTGATGTTCAGGTTCCAGGTGAGTGGGCGTGGGGGTTTGTATTGGGTTCAGGACAAGAATGCTATTCCCAGGGACTGGAAGGCTGGACAAGCTTATGACTCTCAAGTTCAGCTAGATTAG 660 0.5197 MELHSKYQVGLVCVILLLPILSTSQDFTSSRATYYGSPACYGSPRGACGYSEYGKTVNDGSVAGVSGLWKNGSGCGPCYQVRCKNSQVCDEYGTSVVVTDYGEGDKTDFVMNPRAYARMGRNPDASQELYKYGVVEVEYRRIPCSDITAVEVLQEDHQQWWPLRRAYGVVFDAENPPRSDLMFRFQVSGRGGLYWVQDKNAIPRDWKAGQAYDSQVQLD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1861 219 Gene3D - 19 145 IPR036908 -
Acco11g1861 219 SUPERFAMILY PHL pollen allergen 132 214 IPR036749 -
Acco11g1861 219 Pfam Lytic transglycolase 62 139 IPR009009 -
Acco11g1861 219 SMART dpbb_1 61 139 IPR007112 -
Acco11g1861 219 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Acco11g1861 219 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Acco11g1861 219 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Acco11g1861 219 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 144 IPR007112 -
Acco11g1861 219 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 214 IPR007117 -
Acco11g1861 219 PANTHER EXPANSIN-B3 145 217 - -
Acco11g1861 219 SUPERFAMILY Barwin-like endoglucanases 13 146 IPR036908 -
Acco11g1861 219 Pfam Expansin C-terminal domain 144 203 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1861 Acco-ChrAcco11 32921117 32922303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1861 11 218 Expansin Gene Family AT4G17030 50.000 6.01e-79 235