Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1860 ATGGAACTTCATTCTAAATACCAAGTTGGCCTTGTGTGTGTGATGTTGCTCTTACCTGCACTATGCTTATCCCAAGGCTTTATAGACTCCAGAGCCACCTTTTATAGTACCCCCGACGGCTATGGAACCCCAACCGGAGCTTGTGGATATGGAGATTACGGCAGAAGTGTGAACTATGGGAGGGTCGCTGGCGTGTCTGGCTTATGGAGGGGTGGCGCTGGATGTGGTGCTTGCTACCAAGTAAGGTGCAAGGATTCAAGACTATGCGATGACTATGGAACGATGGTAGTGGCAACGGACTACGGAGCAGGAGACAGAACTGACTTCATTATGAGTCTAAATGCTTTCTCTAAACTAGGACGAAACCCTAGTGCATCGGGCGAGCTCAAGAAATACGGAACCGTAGACATGGAATACAGGAGGGTACCTTGTACATATGGAGGCTATAACGTGCGTATCAAGATCCACGAGTCTAGCAGATACCCTGATTACCTTGCTCTTGTCATTCAGTACGTGCCTGGCATAAAAGACGTCACTGCCGTTGAGATCTATGACAATGATGGACATGAATGGAAGGCAATGAGGAGAGTGTATGGGGCAGTGTTTGATATAGTTGGCGCACCAAGTGGACCGTTGAAGCTGAGGCTGCAATTCAGCGGAAGAACAGGTTGGGTTCAGTCCTCCAAGAGTGTCATTCCTGGAGATTGGAAGATTGGAGCTTCTTACGACTCTCAAGTTCATGTCTAA 747 0.4819 MELHSKYQVGLVCVMLLLPALCLSQGFIDSRATFYSTPDGYGTPTGACGYGDYGRSVNYGRVAGVSGLWRGGAGCGACYQVRCKDSRLCDDYGTMVVATDYGAGDRTDFIMSLNAFSKLGRNPSASGELKKYGTVDMEYRRVPCTYGGYNVRIKIHESSRYPDYLALVIQYVPGIKDVTAVEIYDNDGHEWKAMRRVYGAVFDIVGAPSGPLKLRLQFSGRTGWVQSSKSVIPGDWKIGASYDSQVHV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1860 248 Gene3D - 145 245 IPR036749 -
Acco11g1860 248 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Acco11g1860 248 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Acco11g1860 248 Gene3D - 20 144 IPR036908 -
Acco11g1860 248 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Acco11g1860 248 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Acco11g1860 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Acco11g1860 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Acco11g1860 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Acco11g1860 248 CDD DPBB_EXLB_N 28 144 - -
Acco11g1860 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 244 IPR007117 -
Acco11g1860 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Acco11g1860 248 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Acco11g1860 248 Pfam Lytic transglycolase 62 137 IPR009009 -
Acco11g1860 248 PANTHER EXPANSIN-B3 18 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1860 Acco-ChrAcco11 32914516 32915661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1860 11 246 Expansin Gene Family AT4G17030 50.628 9.17e-83 246