Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1855 ATGGGAAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCGCCGGAGAAACCAGTATTATGCAATGCTTGTGGTTCTCGATGGAGGACAAAAGGAACACTTGCAAATTATACTCCATTACATGCTCGAACAGATACTGATGATTGTGAGGATCAAAGGTTTTCAAGGGCAAAGAGCATATCACTAAATAAGAACAAAGAAGTGAAATTGTCTAAACGAAAGCTGAATGTAGATAATTTATTTACTGGAGTGGCTGGCCCTGATTACAACCAAGGTTTTCGAAAGGCTACAGATGAAGATACAAGTAATAGATCAAGTTCAGGATCAGCAATCTCTAACTCAGAGAGTTGCGCTCAATTTGGTGGCACTGATGCCAGTGATTTGACAGGTCCTGCTCAGTCAATTGTCTGGGATGCCATGGTGCCTTCAAAGAAGAGGACATGTGTGGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTATACCATTCTTCATGAACAACAGTCTTATTTTTCAGCATCCTCTGAAGACGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCCAGCTCTCTGTCAGTTGATAACAAACAGTACCCAACCAGTGAGGCATATTCATGTTCTGGTACCACTTATGTGCATAATGGGTATGGCGGTGTGAATTTTCCATCTCCGGGGGTTCAAAAGATCAGGTTTTCTGCTGGCCAAGGAATGCTGCAAGAGCAACTTAAGAGGGACAAGACTCAACATGATAAGGTTCAAATCCTTGGAAATAAGTCGCCACTTTGCTCGGTAGATTTAAATGATGTCATTAACTACGATGAATTTATGAGGACCTTGACAAATGAAGAGCAGCAACAGTTACTGCAGTGTCTCACTGCAGTTGATACTACTAAACTTCCTGATAGCCTGAAAAGCATGTTCAGTAGCTCTCAATTCAAGGAGAACTTGAATTATTTTCAGCAGCTTCTTGCAGAAGGTGTCTTTGATATCTCCTTATCAGGGACAAAACCTGAAGACTGCAGGACTTTGAAAAGGCTAGCATTATCCAATCTGTCAAAATCAAAATGGGTGGAACATTATAACTTACTTAAGAAAAATAAGAACAGAGCTGGAAAATCTGTTGCTTTGGGTTATTCTGGCACTGCATCTAGTAATGCTGCAAATGTCAAGAGATATCATGACAGCCAAAGTAAAAATTTATCAGAATTAAAGACAACGATGAGGAGTCCTAAAAGGGTGATGATGAAGGTTGTCTGTGAGGGCAAGGAAGCTGAAGAATATGGTTCTTGTTTCAGTCCAAAAAGCCTATTTACTTTGCCTTCTGATGGTGAGGCCCTCATGCTTGACTCTTTCAATTTTGTTGAGGAGAGTGGTGATCCGGACCTGCTGCTAGAAGTGCCATCGAACGGTTCTTTTCCCGAGGCAGAGCTTCTGCTCCCAACTTTACGCTTTCGTGCTCAAGCCAGCACCAGTAGTAGCTCAGTATACCCTCATATTCTCCATCCTTGA 1620 0.4228 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTDTDDCEDQRFSRAKSISLNKNKEVKLSKRKLNVDNLFTGVAGPDYNQGFRKATDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDAMVPSKKRTCVGRPKQSSVEKLTKDLYTILHEQQSYFSASSEDDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQYPTSEAYSCSGTTYVHNGYGGVNFPSPGVQKIRFSAGQGMLQEQLKRDKTQHDKVQILGNKSPLCSVDLNDVINYDEFMRTLTNEEQQQLLQCLTAVDTTKLPDSLKSMFSSSQFKENLNYFQQLLAEGVFDISLSGTKPEDCRTLKRLALSNLSKSKWVEHYNLLKKNKNRAGKSVALGYSGTASSNAANVKRYHDSQSKNLSELKTTMRSPKRVMMKVVCEGKEAEEYGSCFSPKSLFTLPSDGEALMLDSFNFVEESGDPDLLLEVPSNGSFPEAELLLPTLRFRAQASTSSSSVYPHILHP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1855 539 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Acco11g1855 539 Gene3D - 288 386 IPR038108 -
Acco11g1855 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Acco11g1855 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Acco11g1855 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Acco11g1855 539 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Acco11g1855 539 MobiDBLite consensus disorder prediction 110 124 - -
Acco11g1855 539 MobiDBLite consensus disorder prediction 100 124 - -
Acco11g1855 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Acco11g1855 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Acco11g1855 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 534 IPR044589 -
Acco11g1855 539 Pfam Asx homology domain 281 366 IPR028020 -
Acco11g1855 539 CDD ZnF_GATA 6 52 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1855 Acco-ChrAcco11 32882342 32888034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1855 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.857 5.59e-167 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco11g1855 ASXH 6.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1855 11 32882342 32888034 Acco12g1704 12 28144227 28149313 CCT