Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1819 ATGGTAGAAAAGGAGGATCTTGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAATACTCCTACTATTCCTCTCCAGCTCAATCTCCTCCCATCTTCTTCTTCCCATGCTGCCTCCAACAATCTTCACAAACCCTCTTGGAACGATGCCTTCACCTCCTCAGATCGAGATTCTGAAACATGCAGATGTGAAGGTCGATCCTTCCTGCGAGGAATCGACGTGAATCGGTTGCCTTCCGGCGGCGACTGCGAAGAGGAGGCCGGTGTTTCGTCTCCGAACAGCACGATCTCCAGCGTGAGTGGCAAGAGAAGTGAGAGAGAGCCCAACGGAGAAGACCACGACCACGACCACGACGCCGACAGAGACTGTTCTCGAGGAATCAGTGACGAAGAAGATGGCGAAACCTCCCGGAAAAAACTCAGGCTCTCAAAAGATCAATCCGCTATTCTCGAAGAAAGCTTCAAAGAGCACAATACCCTCAATCCCAAGCAAAAGATGGCACTTGCGAAGCGTCTAGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTAAAGCAAACAGAGGTAGATTGTGAGTTCTTGAAGAGATGCTGCGAGAATCTAACGGAAGAGAACAGGCGGTTGCAGAAGGAAGTTCATGAGCTTAGAGCACTGAAACTTTCCCCACAACTGTACATGCAAATGACCCCACCCACAACCCTCACCATGTGCCCCTCATGTGAGCGAGTCGCCGTGCCGCCCTATGCCGCCGTCGGAGGCAACCGACACCATCCAATGACCCAGCCTCACGCCCGGCCCATCCCAGTCGGCCGTTGGGCCACTGCAGCAGCTCCCATAGCCCACCGGGCCTTCCATGTCCTCCACCCGAGGTCGTAA 897 0.534 MVEKEDLGLSLSLSFPHNTPTIPLQLNLLPSSSSHAASNNLHKPSWNDAFTSSDRDSETCRCEGRSFLRGIDVNRLPSGGDCEEEAGVSSPNSTISSVSGKRSEREPNGEDHDHDHDADRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAVGGNRHHPMTQPHARPIPVGRWATAAAPIAHRAFHVLHPRS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1819 298 MobiDBLite consensus disorder prediction 87 102 - -
Acco11g1819 298 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Acco11g1819 298 MobiDBLite consensus disorder prediction 73 141 - -
Acco11g1819 298 SUPERFAMILY Homeodomain-like 125 193 IPR009057 -
Acco11g1819 298 SMART HOX_1 134 196 IPR001356 GO:0003677
Acco11g1819 298 FunFam Homeobox-leucine zipper protein 18 120 197 - -
Acco11g1819 298 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Acco11g1819 298 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
Acco11g1819 298 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Acco11g1819 298 Gene3D - 140 190 - -
Acco11g1819 298 CDD homeodomain 136 193 IPR001356 GO:0003677
Acco11g1819 298 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Acco11g1819 298 Coils Coil 191 225 - -
Acco11g1819 298 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Acco11g1819 298 MobiDBLite consensus disorder prediction 33 53 - -
Acco11g1819 298 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Acco11g1819 298 MobiDBLite consensus disorder prediction 33 57 - -
Acco11g1819 298 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Acco11g1819 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 254 - -
Acco11g1819 298 MobiDBLite consensus disorder prediction 103 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1819 Acco-ChrAcco11 32558157 32559543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1819 1 298 Homeobox Transcription Factor Family AT5G47370 61.489 3.17e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco11g1819 HD-ZIP_N 7.4e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1819 11 32558157 32559543 Acco12g1681 12 27803648 27804781 CCT