Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1815 ATGCGCCGCCTCTGTTTCTCTCTGCTAAAACCGGGAGAGAGCGAGAAAAGAACAATTCATTTACAGCAAAACAACAACACATTTTCTGTCTGCGCCAAACCCATTCTCCATTTCTTTATCGGATCATGTGCTGCGGATCACCTTGTTATCCGATACTCTGAAGCTCAAGCCTGGTTTATTAGTCTGTTTGATCTGATTTTAGCTGAATCGGGATCCGTCGATATGACTCGGCGATGTTCTCATTGCAGCCACAATGGCCATAACTCAAGGACTTGCCCGAACCGCGGTGTTAAGCTCTTTGGAGTTCGATTGACTGATGGCTCGATCAAGAAGAGTGCTAGTATGAGTAGTCTCAGCCACTTTGCCGGGTCGAGCTCCGGAGCTCATCATGCCGGGTCTGTCAATTCGGGTTCGCCCGGTGAGACGCCTGATCATGGTGCTGCAGCCGACGGTTACGCCTCCGAGGATTTTGTTCCTGGTTCATCTTCAGTTTCCCGGGAGAGGAAGAAGGGTGTTCCATGGACTGAGGAGGAACATAGATTGTTCTTACTTGGGTTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCACGGAATTTTGTTATATCAAGGACACCTACTCAAGTAGCAAGCCATGCTCAGAAATATTTCAACAGGCAAAGCAACGTGTCTAGGAGGAAAAGACGCTCAAGTTTGTTCGACATTGTTGCTGATGAAAGTGCTGATACACCAATGGAAGAACAGGACCTCTTGCCAGCTAGTCAGCCAGAGGCTGACACAGAAGGCAATGACTCCTTGCCAGCTCCCCCAGCCATTGATGAAGAGTGTGAATCCATGGATTCCGCTTATTCAAACGATGGAGACTCTGCCTCGGCCTCTTTAAAGCCAGATAGCTCACAGCCACACTCACAGTTCCCAGTGCTATATCCTACTTACTTTTCTCCTTTCTTCACAGTTCCTCTGCCTTTTTGGTTTGGATACAGTCCAGAGCCCTCAAAGAAGGAGACAGTACATGAAGTGCTGAAGCCTACCGCAGTACATTCTAAAAGCCCCATCAATGTTGATGAACTGGTTGGCATGTCAAAACTCAGTTTAGGGGACTCTATTGCTGACTCTGGCCCTTCCTCTCTTTCGCTAAAACTCCTCGAGGGACCCTCTCGGCAGTCAGCTTTTCATGCAACTCCCTCATATGGTAATTCAGACATGAATGGCAATGCAATCCCTGCAGTTTAA 1236 0.4814 MRRLCFSLLKPGESEKRTIHLQQNNNTFSVCAKPILHFFIGSCAADHLVIRYSEAQAWFISLFDLILAESGSVDMTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIKKSASMSSLSHFAGSSSGAHHAGSVNSGSPGETPDHGAAADGYASEDFVPGSSSVSRERKKGVPWTEEEHRLFLLGLQKLGKGDWRGIARNFVISRTPTQVASHAQKYFNRQSNVSRRKRRSSLFDIVADESADTPMEEQDLLPASQPEADTEGNDSLPAPPAIDEECESMDSAYSNDGDSASASLKPDSSQPHSQFPVLYPTYFSPFFTVPLPFWFGYSPEPSKKETVHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIADSGPSSLSLKLLEGPSRQSAFHATPSYGNSDMNGNAIPAV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1815 411 CDD SANT 173 218 IPR001005 -
Acco11g1815 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 222 IPR017930 -
Acco11g1815 411 MobiDBLite consensus disorder prediction 129 172 - -
Acco11g1815 411 Pfam Myb-like DNA-binding domain 173 218 IPR001005 -
Acco11g1815 411 Gene3D - 172 224 - -
Acco11g1815 411 FunFam transcription factor MYB1R1 172 223 - -
Acco11g1815 411 ProSiteProfiles Myb-like domain profile. 166 218 IPR001005 -
Acco11g1815 411 SMART sant 170 220 IPR001005 -
Acco11g1815 411 NCBIfam myb-like DNA-binding domain, SHAQKYF class 169 221 IPR006447 GO:0003677
Acco11g1815 411 MobiDBLite consensus disorder prediction 391 411 - -
Acco11g1815 411 ProSiteProfiles SANT domain profile. 174 222 IPR017884 -
Acco11g1815 411 MobiDBLite consensus disorder prediction 239 302 - -
Acco11g1815 411 PANTHER TRANSCRIPTION FACTOR KUA1 77 349 - -
Acco11g1815 411 SUPERFAMILY Homeodomain-like 168 223 IPR009057 -
Acco11g1815 411 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1815 Acco-ChrAcco11 32505966 32508168 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco11g1815 Myb_DNA-binding 3.8e-11 CL0123