Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco11g1793 | ATGGAGAGGCACAGATGCAAGCTGTGCTCTCGAACGTTCGCTAATGGCAGAGCATTAGGTGGCCACATGAAAGCTCACTTGACCTCTCTTCCACTTCCTCCTCCCAAGCCCCTCCCTTTGATCACTTCTTCAACACCCTCCTTCTCTTATTCCTCTTCCGACGACGACGACGACCGAGAACAACAAGTTGAAGTAGTTCCGTCTTACAGAGAATCCGACGACAAGGCTTTGAGTTATGGTTTGAGGGAGAATCCAAGGAAAAATCTCAGGTTCTCAGATCCTGAGTTCTCTTTTGCGGTTGATGCTGGCTCCGTCGTCTTCGTCCAAGACAGAGAAAGCGAGACCGAGTCAAAGAATAATCCAACTCGCCGGCGATCCAAGCGAAACAGAAAATCCAGCGTTGGAGGAGCTATTCAGAAATTTCAAGTGACCAAGGCCAAGTCAAATTTGACGGAGTCGTCGCTGCCAACGGAGCCAGAACCGTTGAGCTCGGTTTCTGATACTTCACCGGATGAAGATGTTGCTATGTGTCTCATGATGCTTTCAAGGGACAGATGGATGAGAAACGACGTCGTGGAACAAGATCAAGTGGAGAGATCGGAGGAACCCGAAGAGATCAAGTTGAAGAGGAAGCGTCAATCTGATAACACTAAGAAAACTTGTCGATCTTCACGCGCATTGGACACACACAATAGGACCTACTTTCCTGAAGCAGAGACGAACAAAATTGCAGGTAACGATAAAATTTTCGAATGCCCATTCTGTTACAAAGTGTTTGGGTCAGGACAAGCACTCGGTGGTCACAAGAGATCCCACCTCCTGCCATCTTCGTCGTCGACTGCTATCCACTCTGCTAAATGTTCCATAGATCTCAACCTGCCAGCTCCGGCGGACGAAGATGATGAACTAAGTGTGGTTTCTGATGCGTAA | 930 | 0.4828 | MERHRCKLCSRTFANGRALGGHMKAHLTSLPLPPPKPLPLITSSTPSFSYSSSDDDDDREQQVEVVPSYRESDDKALSYGLRENPRKNLRFSDPEFSFAVDAGSVVFVQDRESETESKNNPTRRRSKRNRKSSVGGAIQKFQVTKAKSNLTESSLPTEPEPLSSVSDTSPDEDVAMCLMMLSRDRWMRNDVVEQDQVERSEEPEEIKLKRKRQSDNTKKTCRSSRALDTHNRTYFPEAETNKIAGNDKIFECPFCYKVFGSGQALGGHKRSHLLPSSSSTAIHSAKCSIDLNLPAPADEDDELSVVSDA | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco11g1793 | 309 | Gene3D | Classic Zinc Finger | 213 | 272 | - | - | |
| Acco11g1793 | 309 | MobiDBLite | consensus disorder prediction | 110 | 171 | - | - | |
| Acco11g1793 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Acco11g1793 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 252 | 272 | IPR013087 | - | |
| Acco11g1793 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Acco11g1793 | 309 | MobiDBLite | consensus disorder prediction | 132 | 170 | - | - | |
| Acco11g1793 | 309 | MobiDBLite | consensus disorder prediction | 197 | 223 | - | - | |
| Acco11g1793 | 309 | MobiDBLite | consensus disorder prediction | 52 | 81 | - | - | |
| Acco11g1793 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 250 | 272 | IPR013087 | - | |
| Acco11g1793 | 309 | MobiDBLite | consensus disorder prediction | 29 | 81 | - | - | |
| Acco11g1793 | 309 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Acco11g1793 | 309 | SMART | c2h2final6 | 250 | 272 | IPR013087 | - | |
| Acco11g1793 | 309 | Pfam | C2H2-type zinc finger | 250 | 272 | - | - | |
| Acco11g1793 | 309 | Pfam | C2H2-type zinc finger | 3 | 27 | - | - | |
| Acco11g1793 | 309 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 309 | IPR044303 | GO:0006355 | |
| Acco11g1793 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 272 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco11g1793 | Acco-ChrAcco11 | 32358659 | 32359588 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco11g1793 | 2 | 306 | C2H2 Transcription Factor Family | AT1G02030 | 34.954 | 2.46e-37 | 132 |
Transcription factors information