Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1752 ATGAATACGTTTTCACATGTTCCTCCAGGCTTCCGGTTCCACCCCACAGATGAAGAACTGGTTGATTATTACCTAAGAAAAAGGGTAGCCTCCGAAAGGATTGATCTAGATGTTATTAAAGATGTGGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAAAATAGGAGCGGAAGAACCAAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAGTACCCAACAGGTACTCGCACAAATAGAGCCACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGACAAGGCAATCTACCGTAGGCATTGCCTTATTGGCATGAGAAAGACCCTTGTTTACTACAAGGGACGAGCCCCAAACGGACAGAAGTCTGACTGTATCATGCACGAGTACCGACTTGAAACTAATGAAAATGCAACTTCTCAGGAAGAAGGTTGGGTTGTATGTCGAGTGTTCAAGAAGAAAATGACAAGCGTGCGGAGAGTGGGCGAATATGAGTCAGCATGCTGGTTTGAGGACCAAGTATCGTTGATGCAAGAACTTGAATCTGCAAGACCAATATCTCAACCTTATGCATCTAATTACCACCACCACAATCAGTACTACGTACCTTGCAAGCAGGAACTTCATCAATTGCAATATAACGTAACCCTTCCCCATGAAGTTTTCCTTCAGCTTCCTCAACTTGAAAGCCCCAAAGTTCCTTACTCAGCAGCAGCCAGTTTGAGCTGCAATAATTCAACGGTCCCTGCTTATGCCTATGACAGCAACAACAACAACAACAACAACAATAATGGAAGTAGCTTGCACTCGTCCAATTCACTCACTCAGGAAGGGAACATAGCTTGTGGAAACAATGACCATCAAGTGACGACGGATTGGCGAGTTCTTGATAAATTTGTGGCTACTCAACTCAGCAGTCACCACCAGCAAGCTGAAGCTTCCAAGGAAGTGCTCCGTGTGGATGAACCTATCACTATTCAGGCAAACGATCGTCAAATTAAAAGGCCAGAAATTGGGCAGCAGGAATATGCCTCCACATCCACCTCAAGTTTCCAGATTGACCTGTGGAACTGA 1083 0.4423 MNTFSHVPPGFRFHPTDEELVDYYLRKRVASERIDLDVIKDVDLYKIEPWDLQELCKIGAEEPNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRHCLIGMRKTLVYYKGRAPNGQKSDCIMHEYRLETNENATSQEEGWVVCRVFKKKMTSVRRVGEYESACWFEDQVSLMQELESARPISQPYASNYHHHNQYYVPCKQELHQLQYNVTLPHEVFLQLPQLESPKVPYSAAASLSCNNSTVPAYAYDSNNNNNNNNNGSSLHSSNSLTQEGNIACGNNDHQVTTDWRVLDKFVATQLSSHHQQAEASKEVLRVDEPITIQANDRQIKRPEIGQQEYASTSTSSFQIDLWN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1752 360 MobiDBLite consensus disorder prediction 257 286 - -
Acco11g1752 360 MobiDBLite consensus disorder prediction 341 360 - -
Acco11g1752 360 FunFam NAC domain-containing protein 16 160 - -
Acco11g1752 360 MobiDBLite consensus disorder prediction 342 360 - -
Acco11g1752 360 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Acco11g1752 360 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Acco11g1752 360 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Acco11g1752 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 270 - -
Acco11g1752 360 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1752 Acco-ChrAcco11 31915948 31917518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1752 1 358 NAC Transcription Factor Family AT1G62700 51.442 6.95e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco11g1752 NAM 3.4e-34 No_clan