Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1694 ATGCAGTCAGAACCAAATTTGGGAATGATGGGCGGTGGTGGTTATAACGGAGAAGTGGCTGCTTCCGGTGACCATCTCCGGCAACTAAAGGCGGAGATAGCCACCCACCCTCTCTATGACCAGCTTCTCGCTGCACACGTCTCTTGCTTACGTGTCGCCACACCCATCGATCAGCTTCCACTCATCGACGCTCAGTTATCGCAGTCCCACCATATCCTCCGATCATACGAATCACAGCAAATCCATGCCCTCTCACTACCTGAGCGTCAGGACCTTGACAATTTCCTGGCACAATATTTGTTAGTGTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAAAGTCCATGCCGTCGAAGCCGTCATGGCCTGCCGTGATATTGAAAATACCCTACAAGCTCTCACTGGAGTAAGTTTGGGAGAGGGAAGTGGTGCAACAATGTCAGATGATGAGGATGAATTGCCAATGGATTTCTCTTTAGACCAATCAGGCGGTGAAGGACACGACATGATGGGATTTGGTCCATTGCTACCTACGGAATCTGAAAGGTCACTCATGGAAAGAGTTCGTCAGGAACTCAAGATTGAGCTCAAGCAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTAAGGAAAAGAAGAGCAGGCAAGTTACCCGGAGACACAACCTCAGTGTTGAAGAACTGGTGGCAGCAACATTCCAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTGGTGGAGGAGACGGGTCTGCAGCTGAAGCAGATCAATAATTGGTTCATAAACCAAAGGAAACGCAATTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAGAGATAG 873 0.48 MQSEPNLGMMGGGGYNGEVAASGDHLRQLKAEIATHPLYDQLLAAHVSCLRVATPIDQLPLIDAQLSQSHHILRSYESQQIHALSLPERQDLDNFLAQYLLVLCTFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDELPMDFSLDQSGGEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1694 290 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Acco11g1694 290 Pfam Homeobox KN domain 233 272 IPR008422 GO:0003677|GO:0006355
Acco11g1694 290 SUPERFAMILY Homeodomain-like 215 280 IPR009057 -
Acco11g1694 290 SMART KNOX2_2 82 137 IPR005541 GO:0003677|GO:0005634
Acco11g1694 290 Pfam KNOX1 domain 29 70 IPR005540 GO:0003677|GO:0005634
Acco11g1694 290 FunFam homeobox protein knotted-1-like 3 isoform X1 214 275 - -
Acco11g1694 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 277 - -
Acco11g1694 290 SMART HOX_1 215 280 IPR001356 GO:0003677
Acco11g1694 290 ProSiteProfiles ELK domain profile. 193 213 IPR005539 GO:0003677
Acco11g1694 290 Gene3D - 212 286 - -
Acco11g1694 290 Pfam KNOX2 domain 88 136 IPR005541 GO:0003677|GO:0005634
Acco11g1694 290 ProSiteProfiles 'Homeobox' domain profile. 213 276 IPR001356 GO:0003677
Acco11g1694 290 CDD homeodomain 216 277 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1694 Acco-ChrAcco11 31367107 31370837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1694 4 289 Homeobox Transcription Factor Family AT1G62990 78.621 8.82e-171 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco11g1694 KNOX2 4.4e-16 No_clan