LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1683	ATGAACGCTATCTCAACTTTCACATCTAACTCAGAGGGCTCCAACTCCAACTCGTCATCGATATCACCCTCCGACGAAGAAGCGACCGCCATCACATTAGCTTCGGAGAAACCCAAGAAACGAACCGGACGCAGGGTGTTTAAGGAGACAAGACATCCTGTGTACCGAGGAGTGCGTGGCAGGGACAACAATAAGTGGGTCTGCGAGGTTCGTGTTCCTAACAACAAGAAATTAAGGATCTGGCTTGGAACTCATTCCACTCCTGAGAAAGCAGCCAGAGCTCATGATGTTGCTGCTCTCGCTCTTCGTGGCAAGTCGGCTTGTCTCAATTTCGCTGACTCCGCCTGGAGGCTCCCCGTACCGGCGTCCACCGATCCCGATGAGATACGGCGAGTGGCGATGGAGGCAGTGGATGCATTTGATGACGTGGACGAAGTGTGTAGCAGCAGTGTGGGGACGACAATGGGATCATCAGAAGAAGAAGCTAATAACAATAAGGATGGTATGAGTATGGAGTTAGAAAGGTATGTGAATAATAATGAGGTTTTGTTTAGCATGGCGGATGAGCCGTTGAGATCTCCTCCGGCGGCTTATTGTTCTCTGGGAACACAGGGAAGCGGGTGGAGAGACGAAGTGGACCAGGGGGATAGTGAGGTGTCACTTTGGAGCTTTACCATTTAG	681	0.5095	MNAISTFTSNSEGSNSNSSSISPSDEEATAITLASEKPKKRTGRRVFKETRHPVYRGVRGRDNNKWVCEVRVPNNKKLRIWLGTHSTPEKAARAHDVAALALRGKSACLNFADSAWRLPVPASTDPDEIRRVAMEAVDAFDDVDEVCSSSVGTTMGSSEEEANNNKDGMSMELERYVNNNEVLFSMADEPLRSPPAAYCSLGTQGSGWRDEVDQGDSEVSLWSFTI	226

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1683	226	SUPERFAMILY	DNA-binding domain	54	114	IPR016177	GO:0003677
	Acco11g1683	226	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	7	223	IPR045277	GO:0003700
	Acco11g1683	226	SMART	rav1_2	54	118	IPR001471	GO:0003700\|GO:0006355
	Acco11g1683	226	MobiDBLite	consensus disorder prediction	1	43	-	-
	Acco11g1683	226	Pfam	AP2 domain	53	104	IPR001471	GO:0003700\|GO:0006355
	Acco11g1683	226	MobiDBLite	consensus disorder prediction	1	29	-	-
	Acco11g1683	226	Gene3D	AP2/ERF domain	54	113	IPR036955	GO:0003700\|GO:0006355
	Acco11g1683	226	PRINTS	Ethylene responsive element binding protein signature	78	94	IPR001471	GO:0003700\|GO:0006355
	Acco11g1683	226	PRINTS	Ethylene responsive element binding protein signature	55	66	IPR001471	GO:0003700\|GO:0006355
	Acco11g1683	226	Coils	Coil	159	179	-	-
	Acco11g1683	226	ProSiteProfiles	AP2/ERF domain profile.	54	112	IPR001471	GO:0003700\|GO:0006355
	Acco11g1683	226	CDD	AP2	55	114	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1683	Acco-ChrAcco11	31229647	31230327	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1683	31	224	AP2-EREBP Transcription Factor Family	AT1G63030	52.577	9.95e-63	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco11g1683		AP2	7.5e-12	CL0081