Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1682 ATGGCGTCATCGTCGTCATCCAAGAGCAAGAGGCACCCCCTGTATCATGGAATTCGCCGCCGTGGTGGCAAATGGGTGTCCGAAATCCGCGAGCCACGTAAGGATTCTCGCATATGGCTCGGAACGTTCCAGACGCCGGAGATGGCCGCCGCTGCATATGACGTGGCGGCGCTAGCCCTCAAAGGAAACGAAGCGGTCCTCAACTTCCCTGACTGGGTCCACACTTATCCGGTCCCGGCTTCTTCATCTGCCAATGACATTCGCAGCGCCGCCACTGCCGCAGCCGCACTCATGGCGCCTGATCAAGAACAGACCCAAACCAATGAAGACGACGTTGCAGGTAATGCTAATCATGGTAATGATCAGAGCAATAATGTTTCGTGGCCGGAAACAGACCATCAGTTTGTGGACGAGGAAGCCATATTCGACATGCCAAATTTGCTGGTGGACATGGCCGGAGGAATGCTGCTTTCGCCACCCCGAATCGAACCACCACCCTCCGATAACTCTCCCGACGACAATAAGTCGTACGGAGGAACTTTGTGGAACTATTTTTGA 558 0.5466 MASSSSSKSKRHPLYHGIRRRGGKWVSEIREPRKDSRIWLGTFQTPEMAAAAYDVAALALKGNEAVLNFPDWVHTYPVPASSSANDIRSAATAAAALMAPDQEQTQTNEDDVAGNANHGNDQSNNVSWPETDHQFVDEEAIFDMPNLLVDMAGGMLLSPPRIEPPPSDNSPDDNKSYGGTLWNYF 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1682 185 MobiDBLite consensus disorder prediction 100 129 - -
Acco11g1682 185 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Acco11g1682 185 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Acco11g1682 185 MobiDBLite consensus disorder prediction 158 179 - -
Acco11g1682 185 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Acco11g1682 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 184 IPR045277 GO:0003700
Acco11g1682 185 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Acco11g1682 185 Pfam AP2 domain 14 62 IPR001471 GO:0003700|GO:0006355
Acco11g1682 185 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Acco11g1682 185 FunFam Ethylene-responsive transcription factor 2 13 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1682 Acco-ChrAcco11 31203360 31203917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1682 4 184 AP2-EREBP Transcription Factor Family AT5G52020 51.087 4.06e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco11g1682 AP2 2.7e-10 CL0081