Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1668 ATGGCGACGAATAGGTCACGGGATCCTTCCTCCGACGACATAGTCGATTCGACGCCGTTCATAGAAAATTCAGGTGGGTCTTCCGATGAATTGAATTCTGGCCGTCGCTTTGTTCGCAGGCAGAGCCTGCGCCAAGCGGCTCGGTTCCTGAGGCAGGCCAGTGGCCGGAGGATGATGCGCGAGCCATCGATGCTAGTCAGAGAGACTGCAGCCGAGCAATTGGAGGAGAGACAGGGAGATTGGGCTTATTCTAAACCCGTTGTGATCCTTGATATTATCTGGAACTTCGTCTTCGTTGCCGGGGCTGCTGCGGTTTCAATTTTGAGTCGAAGCGAGTCGCCGAGCATGCCTTTGAGGTTGTGGATTACGGGCTACGCTCTGCAATGTATCCTTCACGTGTTCTGCGTCTGCGTTGAATATAGGAGGCGGAGGCGGTTCCGGCGGCGCCAGTATCCGCCATCCTTGGACTCATTGCACGGAAGGACAGGCAGCGGTGAGAATCTGAGTCCAGGTTCAAGGGATGGTTCTGGGCACTATGTGACATTGGCGCAATTCAACGAAGAGGGTTCAAGTGTAGCGAAGCATTTGGAGTCAGCAAACACAATGTTTTCATTTATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAATCTTTAGTCCTTGATTCTCCATTATTATACTGGTTATGTATAGCTTTCCTGGGTTTTGATGTTTTCTTTGTTGTATTCTGTGTTGCTCTGGCATTCATCATTGGTATTGCTGTATGCTGTTGTCTTCCATGCATTATTGCACTTCTATATGCTGTTGCAGACCAGGAAGGAGCATCAAAAGAAGACATTGAGCAGTTGGCTAAGTTCAAATTCAGAAGGCTTGACAATGATGAGAAACTTGCTGGAAATGCAGAAGAACCAGTTGGTGGAATAATGACTGAATGCAGCACAGATTCACCGAGTGAACATATTCTTTCTGAGGAGGATGCGGAATGCTGCATCTGTCTATCTGCTTATGATGATGGTGTTGAACTTAGAGAACTTCCTTGTGGCCACCATTTTCACTGTGCCTGTGTAGACAAGTGGCTGCACATTAATGCTACTTGTCCTCTCTGCAAGTATAACATCTTAAAGAGAATCGACCAAGGGGAAGTGTAG 1158 0.4793 MATNRSRDPSSDDIVDSTPFIENSGGSSDELNSGRRFVRRQSLRQAARFLRQASGRRMMREPSMLVRETAAEQLEERQGDWAYSKPVVILDIIWNFVFVAGAAAVSILSRSESPSMPLRLWITGYALQCILHVFCVCVEYRRRRRFRRRQYPPSLDSLHGRTGSGENLSPGSRDGSGHYVTLAQFNEEGSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLVLDSPLLYWLCIAFLGFDVFFVVFCVALAFIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLAKFKFRRLDNDEKLAGNAEEPVGGIMTECSTDSPSEHILSEEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLHINATCPLCKYNILKRIDQGEV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1668 385 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Acco11g1668 385 PANTHER TARGET OF ERK KINASE MPK-1 53 377 - -
Acco11g1668 385 Pfam Ring finger domain 331 373 IPR001841 -
Acco11g1668 385 FunFam E3 ubiquitin-protein ligase At1g12760 318 382 - -
Acco11g1668 385 SUPERFAMILY RING/U-box 323 379 - -
Acco11g1668 385 SMART ring_2 332 372 IPR001841 -
Acco11g1668 385 MobiDBLite consensus disorder prediction 1 32 - -
Acco11g1668 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 381 IPR013083 -
Acco11g1668 385 CDD RING-H2_RNF6-like 331 373 - -
Acco11g1668 385 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1668 Acco-ChrAcco11 31056585 31059716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1668 24 382 C3H Transcription Factor Family AT1G68070 47.922 4.19e-113 332