Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1657 ATGTACTCGTCGATCTTTGCAGAACGATCCAGGGCATTGTCAAAAATTCTCTGCAACTTCATCTTGGTCCGAAACATGGGTGGGGGTCCTCGGACCTTCCCGGGTGGCGTCAACAAGTGGAAATGGAAGCGCATGCACGAGAAGCGAGCCAGAGATAAAGAGAGAAGGCTTCTTGAACAAGAAAAACAGCTCTACCAGGCTCGCATTCGCTCCCATATCCGAGTTAAACTAGCGGGAAAACCTGACACCTCTAGCGCCACTCACAGGCCGATGGCCCCGGAGGACCATATTAAGGCCTTAGCCAATCGATTTATGAAGGAAGGTGCTGAAGATCTCTGGAACAGAAATGACGGTCCGTTGAAGCCTCCGCCTCCGCATCTCAGAGAATTTCCGGGATCAAGCAGACGGCGGGGATCAATATCGTCGCCTTTTGATCTGAGGAAACGAGCACCGGAAGGCCGTCACATGCTTTCTGATAGCCAAAATAACAATGTGATGAATACGAGTAGTAATTTTACTCATACCAGGGATTACTCGACGCAAAGTCGGAGGAGGTTTCAAAGGAATGAGAGCTCGTCAGAGGATGAGGATTCTGATTTTGGTTTGGAGAGAAATCCTACAAGATCTATGGTCAGAAACTCATTCAGTACTCAGAAAACCCTGATTAACGCAAATGCGAGTGAATATACAAACAACAAGAAAAATATGCCGAAAAGGAAACGAAAGTTATGGAGAGATGACAGTTCTTCCAGCGAGAGTGAATCAGACATGGATTCAGACGGTTTAAGGATCGCCAGGGGCGTAAATAAGATAGGTAGTAGTGCTTCTTTGGGGAAGTATGATGTAAATACAAAGAGGAGGGTGCTCCCGAACTCTTATGACGAGGAGAGTGACCTTTCGGAACAGATTGAATTGATCAAGTATGATCTAAATAAGAGGAAGATGATCGAGAATGAGCTGCAGAAAAGTGAGGAAGATACGTTACTTAGTCAGAAAAGATTTGATGAGTGTGGCATATCGCCACTGACAATCAAGGCACTTTCTTCAGCTGGTTATATTCGCATGACACGAGTTCAGGAGGCTAGCCTTTCTGTTTGCCTTGAGGGCATGGATGCTTTGGTCAAAGCTAAAACTGGCACAGGGAAAAGTGCTGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTTAAGGCAATAAGTGTAAATGTCCCTCAACGTGTGCCTCCAATACTTGTTCTGATCCTGTGCCCTACCAGAGAACTTGCGATTCAACTTACTGCAGAATTAAAAGTTCTACTCAAGTATCATGATGGAATTGGAGTTCAGACTCTAATAGGAGGTATTCGATTCAAAGACGACCAAAAACGTCTTGAATCAGATCCATCTCAGATCATTGTTGCTACTCCAGGTAGGTTGCTGGATCATATTGAGTACAAGTCTGGAATATCTCTGCGGTTGATGGGTTTGCGGATGCTTATACTTGATGAAGCTGATCATTTATTGGACCTGGGCTTTCGAAAGAGTGTGGAAAAGCTTGTCGATTGTTTGCCCCGTCAAAGGCAATCCTTGCTATTTTCTGCAACCATTCCAAAGGAGGTCCGGCGTATATCTCAACTCGTTTTGAAAAGGGATCACACATATATTGACACAGTGGGGATAAATAGTGTGGAAACTCCTGTTAAAGTAAAGCAGTCTTATCTTGTCACTTCTCATGAATCTCATTTTCAAATAGTGCACCATATTTTGAAGGAGCACATCTTGCAAGCACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTGACTTCACTCTTGTATCAACTTCTTCGGGAGATGAAAATGAATGTTAGGGAGATACATTCACGAAAACCTCAACTTTATCGAACTCGCATATCAGATGAGTTCAAGGAATCCAAACAACTGATTCTTATCTCGTCTGACGTTTCATCTCGTGGAATGAATTATCCTGACGTTAGCTTAGTCATCCAGGTTGGTATTCCTACTGACCGAGAACAATATATCCATCGTGTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAATGCATATTGTTAATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATCAAAGATCTCCCTCTGACGAGATCCCCTTTACCAGATATAGATCCCGAGACAAAGCTTAAGGTAGAAAATTCAATGGCAAAGATTGATAACGACGTCAAAGAATCAGCTTATCACACGTGGCTTGGTTATTATAATTCGATAAGGGAAATCGGGAGAGACAAAGTCACTCTAGTTGAGCTGGCGAGCCAATTTTCGGAATCCATTGGGTTGCAGAGGCCTCCTGCAATATTCAGGAAGACTGCACTAAAGATGGGATTAAAAGACATTCCTGGCATCAGAATACGTAGATAG 2406 0.4343 MYSSIFAERSRALSKILCNFILVRNMGGGPRTFPGGVNKWKWKRMHEKRARDKERRLLEQEKQLYQARIRSHIRVKLAGKPDTSSATHRPMAPEDHIKALANRFMKEGAEDLWNRNDGPLKPPPPHLREFPGSSRRRGSISSPFDLRKRAPEGRHMLSDSQNNNVMNTSSNFTHTRDYSTQSRRRFQRNESSSEDEDSDFGLERNPTRSMVRNSFSTQKTLINANASEYTNNKKNMPKRKRKLWRDDSSSSESESDMDSDGLRIARGVNKIGSSASLGKYDVNTKRRVLPNSYDEESDLSEQIELIKYDLNKRKMIENELQKSEEDTLLSQKRFDECGISPLTIKALSSAGYIRMTRVQEASLSVCLEGMDALVKAKTGTGKSAAFLLPAIETVLKAISVNVPQRVPPILVLILCPTRELAIQLTAELKVLLKYHDGIGVQTLIGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMGLRMLILDEADHLLDLGFRKSVEKLVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHTYIDTVGINSVETPVKVKQSYLVTSHESHFQIVHHILKEHILQAPDYKVIVFCITGMVTSLLYQLLREMKMNVREIHSRKPQLYRTRISDEFKESKQLILISSDVSSRGMNYPDVSLVIQVGIPTDREQYIHRVGRTGREGKEGECILLIAPWEEYFLDEIKDLPLTRSPLPDIDPETKLKVENSMAKIDNDVKESAYHTWLGYYNSIREIGRDKVTLVELASQFSESIGLQRPPAIFRKTALKMGLKDIPGIRIRR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1657 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 730 IPR001650 -
Acco11g1657 801 Pfam Helicase conserved C-terminal domain 579 684 IPR001650 -
Acco11g1657 801 Gene3D - 556 780 IPR027417 -
Acco11g1657 801 MobiDBLite consensus disorder prediction 141 155 - -
Acco11g1657 801 Pfam DEAD/DEAH box helicase 356 534 IPR011545 GO:0003676|GO:0005524
Acco11g1657 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 702 IPR027417 -
Acco11g1657 801 CDD SF2_C_DEAD 561 694 - -
Acco11g1657 801 MobiDBLite consensus disorder prediction 207 232 - -
Acco11g1657 801 MobiDBLite consensus disorder prediction 178 203 - -
Acco11g1657 801 SMART helicmild6 604 685 IPR001650 -
Acco11g1657 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 332 360 IPR014014 GO:0003724
Acco11g1657 801 PANTHER RNA HELICASE 294 730 - -
Acco11g1657 801 MobiDBLite consensus disorder prediction 112 261 - -
Acco11g1657 801 Coils Coil 43 63 - -
Acco11g1657 801 SMART ultradead3 351 562 IPR014001 -
Acco11g1657 801 MobiDBLite consensus disorder prediction 156 177 - -
Acco11g1657 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 363 546 IPR014001 -
Acco11g1657 801 Gene3D - 309 548 IPR027417 -
Acco11g1657 801 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1657 Acco-ChrAcco11 30997715 31002511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1657 334 715 Eukaryotic Initiation Factors Gene Family AT3G19760 28.750 2.06e-43 160