Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1643 ATGTTCGAAGGGAAGCTAGACCCAGTTGAAGTGCTAGAATGGCTGAAACGTTTGGAGAAGATTTTTAAAGTTATCGAGATCAGCTCACAACAAAAGGTGCTGGTGGCCGAACAATTGTTGCAGAAGGCAGGTCAAGAATGGTGGGAAAGCACCAGAATTAATGAAGATGTTGAGATGACATGGGAGGAGTTTAGGGGAAAATTCGAGGAGTATTATTTCCATACTACCCACAGAATAGCGAAGGAACCCGAATTCCTTACATTCAAGCAAGAAGATCTACACGAAGAAGAATTCATTGCTCGATTTCTGGAATTGTCTAAGTTTTGTGAACATTCGCAAAACAACTCTAAGTGGATGTGTGATCGATTGGTTGAAAAAGTTAGGCCGGATTTAAAGACGACATTATCACCATGTATTGGTGATATCAAAAACTTTGAGAAGATGTGTGACAAATTGCGCACAGTAGCCAGGAGTAAGCGAGAAGAAGAAGAGGCAAAAAAGGGATTCCAATCTAAAGCTACACCTTCCATGGAACCTATGGGAGGGATTAATAAGACGCGCAACCAAAACTTTAGTGGTGTGAGGACGCGATTTAGTCAACCATCAAGGAATCCTTCTGGTATGCCATCAAGGAGTCATCTTAGTAGACCACCGATGAGTCAATTTAGCGGGGGTCAGAACTCATATAGGGGATCCACAGCTCCTGTTGCTAGCACAACTAACAGTCAGAAGTGTGCTAGGTGTGGAAAGATGCATCAAGGATGTTGTGAACTACCGCCGTACTGGCTTGAGTTATGCGTGTCACCCAGCAACAGAGTTCTGGTTAATAGCTCAAGAAGTTTGAGTCTTCTAGTAGATTTGGGAAGCATAAATAGTGTACTTGGTGACAAATCTCATAGTAAATGCATGGATGGGAGAGAAGCTATGGCATTCTCTGGAGGCCCTCCTTCTTATTACATGCATAGAGGAGACATTGTTTGGTCTGTCCCTGGAACACATTCCGGAGGGTTTCAAGTGCCTCCTGGGTTCAGATCAAACTCCGGCATTCCAGCACAGTCAAATGTACGAGGTAGCTCTATGGGTTCTACTGTTAGAGTAGAACCTGTTCGTGCCGATTATAGCCATAGCCATGGCATGAACATTAGTTCGTCTCCTGGAGTACCTTCTTCAAGCGAGCGTGTGAAAAAGAAACGAGGAAGGCCTCGTAAATACCGTCCTGATGGACCTGTTTCTCTGGGTTTGTCTCCCATGTCTGCCACTGCAAATTCAACCCCTGCTTCGAGCACTCCATCCCAGAAACGAGTTAGAGGGCGCCCACCTGGAAGTGGAAGGAAACAACAACTAGCCTCGCTAGGTGAATGGATGAACAGTTCTGCAGGGATGGCTTTTGCACCTCATGTTATCACAATTGGAGCTGGGGAGGACATTGTAGCAAAGTTATTGTCCATTTCACAACAGAGACCTAGGGCGCTGTGCATCTTGTCAGGTACTGGGACTGTTTCATCAATTACTCTGCGGCAGCCTGCTTCTAGTGTTGTCAGCATCACTCTTGAGGGCCGATTCCAAATATTACGCTTGTCTGGTTCTTACCTGGTTGCTGAAGATGGTGGACACCGTAGTAGAACAGGCGGCGTGAGTGTTTCCCTTGCTAGTCCTGATGGTCACGTTATCGGTGGTGCGGTTGCTGCGCTCATGGCTGCAAGCCAAGTGCAGGTGGTAGTGTGCAGTTTTATATATGAAGGGTCCAAGATCAAGACGAAGCAATTGAGTGCCTTGGAGGGCGGTGTTACAGAAACTGAGCATGATAACAAGTTAGCTACTCCGGCAAGTACTCCACCGTCTCAGAACTACAGTCAACCAACAAGAGGCATTTGGGGATCCGATCTAAAAAGTACACACACTGGTATTGACTTGATGCATGGATAA 1926 0.46 MFEGKLDPVEVLEWLKRLEKIFKVIEISSQQKVLVAEQLLQKAGQEWWESTRINEDVEMTWEEFRGKFEEYYFHTTHRIAKEPEFLTFKQEDLHEEEFIARFLELSKFCEHSQNNSKWMCDRLVEKVRPDLKTTLSPCIGDIKNFEKMCDKLRTVARSKREEEEAKKGFQSKATPSMEPMGGINKTRNQNFSGVRTRFSQPSRNPSGMPSRSHLSRPPMSQFSGGQNSYRGSTAPVASTTNSQKCARCGKMHQGCCELPPYWLELCVSPSNRVLVNSSRSLSLLVDLGSINSVLGDKSHSKCMDGREAMAFSGGPPSYYMHRGDIVWSVPGTHSGGFQVPPGFRSNSGIPAQSNVRGSSMGSTVRVEPVRADYSHSHGMNISSSPGVPSSSERVKKKRGRPRKYRPDGPVSLGLSPMSATANSTPASSTPSQKRVRGRPPGSGRKQQLASLGEWMNSSAGMAFAPHVITIGAGEDIVAKLLSISQQRPRALCILSGTGTVSSITLRQPASSVVSITLEGRFQILRLSGSYLVAEDGGHRSRTGGVSVSLASPDGHVIGGAVAALMAASQVQVVVCSFIYEGSKIKTKQLSALEGGVTETEHDNKLATPASTPPSQNYSQPTRGIWGSDLKSTHTGIDLMHG 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1643 641 MobiDBLite consensus disorder prediction 603 626 - -
Acco11g1643 641 Gene3D - 465 593 - -
Acco11g1643 641 Pfam Plants and Prokaryotes Conserved (PCC) domain 465 577 IPR005175 -
Acco11g1643 641 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 372 613 IPR039605 GO:0003680
Acco11g1643 641 SUPERFAMILY AF0104/ALDC/Ptd012-like 462 578 - -
Acco11g1643 641 CDD DUF296 465 577 IPR005175 -
Acco11g1643 641 MobiDBLite consensus disorder prediction 157 235 - -
Acco11g1643 641 MobiDBLite consensus disorder prediction 376 390 - -
Acco11g1643 641 ProSiteProfiles PPC domain profile profile. 458 602 IPR005175 -
Acco11g1643 641 MobiDBLite consensus disorder prediction 181 235 - -
Acco11g1643 641 MobiDBLite consensus disorder prediction 599 626 - -
Acco11g1643 641 MobiDBLite consensus disorder prediction 415 435 - -
Acco11g1643 641 Pfam Retrotransposon gag protein 39 116 IPR005162 -
Acco11g1643 641 MobiDBLite consensus disorder prediction 338 448 - -
Acco11g1643 641 MobiDBLite consensus disorder prediction 339 361 - -
Acco11g1643 641 Coils Coil 142 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1643 Acco-ChrAcco11 30893814 30903266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1643 303 579 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 55.102 1.37e-89 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1643 11 30893814 30903266 Acco11g1643 11 30893814 30903266 ECH