Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1595 ATGGGTCACCACTCATGCTGCAATCAACAGAAGGTAAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACTCATGGCTATGGCTGTTGGAGTGAGGTCCCCGAGAAAGCTGGGCTGCAACGGTGCGGTAAGAGTTGTCGCCTGAGGTGGATTAATTATTTGAGACCTGATATTAGAAGAGGCAGGTTTACTCCTGAAGAAGAGAAGTTAATAATAAGCCTTCATGGGGTCGTGGGCAACAGGTGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACAGACAATGAAATAAAGAACTATTGGAATTCATGGATCAAAAAGAAAATAAGAAAGCCTTCTTCAGTTTCTTCAACCACAAATAATGCACAAAGCAGCATCATCGATCACCACCAATATAACTTCAATAATAATCCCAATCAATTAGACTTCACAAACCAAGATAATCTAACCACAAAACCACCACCAATTCATCACCACCATGACCCTACTACTTCTCTATTTTCTTCCACATGCCCCTTATTTATGTTTGACACTAGCTCTTTAGATGCTTCTTCTGCAACAACAACCACCACAATAATGGACAACAACAACAACAATGCAAGATTACCAGAAATGTTAATCCACCATCACCATCACCAGCAAGATGCTACTATGGGTTTAAGCTCAGAAGCATGGAATAATCTCAGCCACCACCATCAGATTCAAGCTTTTCCTCCTCCTCCTCCGTCGTCAGCTTCTTTCAGCGGGGCGGCTTCAGGCATGGTGGCTTCTAATTATCTGCCACCGTTGATAGAGAACGTGGACAACATGGTGCCGAATATTCATGAAGTGCAATCTTGCAGTATAGTGGATGAGGAAGGTGAAATGGCACTGGAGTGCTTGCAGAGGCATGAGTTGAACGAGTGGGTGGTGGACAATACAGTACAGCAACAATGTCCCAGCTTTATTTTTTGGGAAAATGTGGAAGGACAACTTGGCGGCGGCAGCGGCGAAGGCGAAGAAATTGCACCGAATTCTTCGAATTTGGCAACTGCACTCTCTTCTTTTCCTTCCTCCTTATGA 1083 0.4432 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSVSSTTNNAQSSIIDHHQYNFNNNPNQLDFTNQDNLTTKPPPIHHHHDPTTSLFSSTCPLFMFDTSSLDASSATTTTTIMDNNNNNARLPEMLIHHHHHQQDATMGLSSEAWNNLSHHHQIQAFPPPPPSSASFSGAASGMVASNYLPPLIENVDNMVPNIHEVQSCSIVDEEGEMALECLQRHELNEWVVDNTVQQQCPSFIFWENVEGQLGGGSGEGEEIAPNSSNLATALSSFPSSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1595 360 CDD SANT 69 112 IPR001005 -
Acco11g1595 360 FunFam MYB transcription factor 6 66 - -
Acco11g1595 360 CDD SANT 17 61 IPR001005 -
Acco11g1595 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco11g1595 360 PANTHER MYB DOMAIN PROTEIN 55 1 255 - -
Acco11g1595 360 SMART sant 66 114 IPR001005 -
Acco11g1595 360 SMART sant 13 63 IPR001005 -
Acco11g1595 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Acco11g1595 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco11g1595 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco11g1595 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco11g1595 360 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Acco11g1595 360 Gene3D - 69 138 - -
Acco11g1595 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco11g1595 360 Gene3D - 6 66 - -
Acco11g1595 360 FunFam Transcription factor MYB26 68 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1595 Acco-ChrAcco11 30439862 30441848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1595 1 341 MYB Transcription Factor Family AT1G63910 51.220 3.69e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco11g1595 Myb_DNA-binding 5.8e-15 CL0123