LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1586	ATGGCAGGGAACAGGAGAGCCAAATCTGATTTCACATCATCTGAGTCAGCAACTGTTTCCTTCACGGATGAACTTGCGTGCTTCATGGACTGGGATTTGCAAGCTATTGTGAGAGGCTACACCGGTGAACAAGCCCCATCAGAAACAACTGTCATGTCTATGATAGACATGACAAACCCTAATTTTCCTCATTTCTGTTCTGAATTACAAGTTCAAGACGATGATCCTTTCTGTATTGCTTTTCCAGAATTCTCAGACACCACCCCGATGCTTAATGAATTGACAGATCTTTACAAGCCTTTCTCATCAACACAAACAATCATCACCACCACTTCCGTACCCATCCCAAAAGAAGTCGTAGTCATCAAAGCATCAGATCAGGAAGTTCAAGATTTGCATGTATCTCCACGCAAAAGAATAAGCAAGAAGAACCAGAACAAGAGAGTGGTGAAGAAGGTGAGAGAAGATGGACTATGCGACTCCTGGGCATGGCGGAAGTACGGGCAGAAACCGATCAAGGGATCGCCGTATCCGAGAAGCTACTACAGATGTAGCAGCTCCAAAGGGTGCTTGGCAAGGAAACAAGTTGAAAGGAGCTATTTGGATCCACAAGTTTTCATAGTGACTTATACTGCAGAACACAGTGATCATGATCACACACCTCGCTCCTCGCGTAGAACTAGGCAATATTCAAATATTATTGTTCCACCTGAAACTACTAATGAACACAAAACTTCTTCTGATAATCCTTTGGAAGATTCCATTGAAGAGGAGCCAATTATTGTGTCCGGTGGATCAGACCAGTGCCTGAACAAAGATCAATTATCGTCCCAAGTTGCTCAAATTGGTGAGATTGTTATGGGTCATGATAATTCAACCAATGATGATTGGTTTCCAAGTATAGACGAACTAGACAGACTTAGCCAAGAATTTGCACTAGGTAGTTACCTTCATGGCCAATTGTGA	966	0.4286	MAGNRRAKSDFTSSESATVSFTDELACFMDWDLQAIVRGYTGEQAPSETTVMSMIDMTNPNFPHFCSELQVQDDDPFCIAFPEFSDTTPMLNELTDLYKPFSSTQTIITTTSVPIPKEVVVIKASDQEVQDLHVSPRKRISKKNQNKRVVKKVREDGLCDSWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERSYLDPQVFIVTYTAEHSDHDHTPRSSRRTRQYSNIIVPPETTNEHKTSSDNPLEDSIEEEPIIVSGGSDQCLNKDQLSSQVAQIGEIVMGHDNSTNDDWFPSIDELDRLSQEFALGSYLHGQL	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1586	321	MobiDBLite	consensus disorder prediction	213	253	-	-
	Acco11g1586	321	Pfam	WRKY DNA -binding domain	160	215	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1586	321	Gene3D	WRKY domain	142	212	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1586	321	ProSiteProfiles	WRKY domain profile.	153	219	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1586	321	MobiDBLite	consensus disorder prediction	226	244	-	-
	Acco11g1586	321	SUPERFAMILY	WRKY DNA-binding domain	155	216	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1586	321	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	29	255	IPR044810	GO:0003700
	Acco11g1586	321	SMART	WRKY_cls	158	219	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1586	321	FunFam	WRKY transcription factor 22	142	212	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1586	Acco-ChrAcco11	30357847	30359850	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1586	24	262	WRKY Transcription Factor Family	AT4G23550	40.909	6.04e-43	148

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco11g1586		WRKY	2.8e-23	CL0274