Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1583 ATGGCTAGCGAATTTGAAAAGAAAGCCAAAGAAGCCTTCTTCGACGATGACTTCGCTCTCGCTGTTCAATTGTATTCTCAAGCAATCGTCTTGGATCCCTCCAAGGCCGATCTCCTTGCCGATAGAGCTCAGGCCCACATTAAACTCAACAACTTCACTGAAGCGGCTTCGGATGCAAGCAAAGCAATCCAATTGAACCCATCGTTGCTAAAAGCGTATCTTCGTAAAGGGACTGCATGCTTAAAGCTTGAAGATTATCATGCTGCCAAGGTGGCGTTTGAGACTGGTGCTTCTTTGTCTGAAAACGATTCAAGATTCACCAAGTTAATCGAAGAATGCAATCGCCATGTTCCAAAGGAATCCGATGGTCTCAGTAGCTCTTTATTATCAAATGTGGCAGCATTGAATGTATCGCCTATTACAACAGAAGAAGATGAAGGACTTAGTCGTGCACATCAAGAAAACACTGATACCGCTGCGAAACCAAGATACAGACATGAATACTACCAAAATCTAGGGGAAGTGGTTTTGACCATTTTTGCTAAAGGAATACCAGCAGAAAATGTGTTTGCTGAGTTTGGAGAACAAATTCTGAGCGTTGCTATTGATGTTCCTGGCCAAGAAGCCTACCACTATCAATCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAGATTTGTGGTGCTGTCGACCAAAATTGAAATTTGTCTCGCCAAATCTGAAGCTATTACGTGGACATCTCTTGAATATAGCAAGGAAGCTGTTCCTCAGACAAAAAATATCCCATTAGCTAAATCTCATAGGCCTGAGTACCCATCATCAAAGCCAAAGAAAGATTGGGATAAGCTGGAAGCTCAAGTGAAGAAAGAGGAGAAGGAAGAAAAGCTAGATGGTGATGCTGGTTTGAACAAGCTGTTCCGAGATATATTCCAAAATGCAGATGAGGACATGAGAAGAGCCATGACTAAGTCTTTCGTGGAGTCGAATGGGACTGTTCTGTCAACAGACTGGAAAGAAGTGGGATCAAAGAAGGTTGAAGGTAGTCCTCCAGAAGGTATGGAGCTGAAGAAATGGGAATACTGA 1086 0.4263 MASEFEKKAKEAFFDDDFALAVQLYSQAIVLDPSKADLLADRAQAHIKLNNFTEAASDASKAIQLNPSLLKAYLRKGTACLKLEDYHAAKVAFETGASLSENDSRFTKLIEECNRHVPKESDGLSSSLLSNVAALNVSPITTEEDEGLSRAHQENTDTAAKPRYRHEYYQNLGEVVLTIFAKGIPAENVFAEFGEQILSVAIDVPGQEAYHYQSRLFGKIIPDKCRFVVLSTKIEICLAKSEAITWTSLEYSKEAVPQTKNIPLAKSHRPEYPSSKPKKDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIFQNADEDMRRAMTKSFVESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1583 361 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Acco11g1583 361 MobiDBLite consensus disorder prediction 341 361 - -
Acco11g1583 361 CDD p23_CS_SGT1_like 167 250 - -
Acco11g1583 361 ProSiteProfiles SGS domain profile. 271 361 IPR007699 -
Acco11g1583 361 Gene3D - 156 263 IPR008978 -
Acco11g1583 361 SMART tpr_5 70 103 IPR019734 GO:0005515
Acco11g1583 361 SMART tpr_5 2 35 IPR019734 GO:0005515
Acco11g1583 361 SMART tpr_5 36 69 IPR019734 GO:0005515
Acco11g1583 361 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Acco11g1583 361 PANTHER PROTEIN SGT1 HOMOLOG 1 359 IPR044563 GO:0051087
Acco11g1583 361 Pfam SGS domain 279 359 IPR007699 -
Acco11g1583 361 FunFam Protein SGT1 homolog A 159 263 - -
Acco11g1583 361 SUPERFAMILY HSP20-like chaperones 153 256 IPR008978 -
Acco11g1583 361 Pfam CS domain 165 240 IPR007052 -
Acco11g1583 361 ProSiteProfiles CS domain profile. 161 250 IPR007052 -
Acco11g1583 361 MobiDBLite consensus disorder prediction 262 282 - -
Acco11g1583 361 FunFam Protein SGT1 homolog 1 128 - -
Acco11g1583 361 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Acco11g1583 361 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Acco11g1583 361 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1583 Acco-ChrAcco11 30320592 30323603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1583 1 86 U-box Gene Family AT3G07370 30.233 5.18e-07 48.9