Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1566 ATGGGCAATTGCAGCGGCGTCCCTTCCGCCCAAAACCAACTCAGCTCCGACGGTCCCGGCCGTGCCCCACCTACCAATGGCCTCTCCGTCCTTCCTCCAAACTCTGAGCCCACACCACCTGAACCACCTCTTTCTTCCGTCCTCGGCCGCGTACTTGGCCGTCCCTTGGAGGACGTCCGTTCCACCTACATCTTCGGCCGCGAGCTAGGTCGTGGTCAATTTGGTGTTACCTACTTAGTCACCCACAAAGTCACTCAACAACAATTCGCCTGCAAATCCATTGCCACCCGCAAGCTCATTAACCGCGACGATATCGATGACATTCGCCGCGAGGTTCAGATCATGCACCACCTCACAGGTCATCGCAACATTGTTGAGCTCAAGGGAGCTTATGAGGATCGCCACTCTGTCAATTTGGTCATGGAGCTCTGCGCTGGTGGGGAGCTCTTCGATAGGATCATAGCTAAAGGCCATTACTCGGAGCGTGCGGCAGCAAATTTGTGCCGCCAGATCATGAAGGTTGTGCATAGTTGTCACTCCATGGGAGTGTTTCATAGGGATTTGAAGCCTGAGAATTTCTTGTTCCTCAGTAAAGACGATAATTCGCCTCTTAAGGCCACTGATTTTGGTCTCTCCGTGTTCTTCAAGCCAGGAGATGTATTTAGCGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAAGTGCTTCGTAGAAGTTATGGACCAGAAGCTGATATTTGGAGTGCCGGGGTTATATTATACATTCTGCTTAGCGGTGTCCCGCCTTTCTGGGCTGAAAATGAACGGGGAATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGTGTCAAAACCTTGGCCTTCTATATCAAGTAGCGCCAAAGATTTGGTTCGAAAGATGCTGCGAGCTGACCCCAGAGAACGGCTTTCAGCTGTTGACGTCCTTAATCATCCTTGGATGAGAGAAGATGGGGATGCATCTGATAAGCCTCTTGACATTGCTGTTTTGACAAGAATGAAACAATTCCGAGCAATGAATAAACTAAAGAAAGTAGCTCTGAAGGTAATTGCAGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAGATGTTCAAATCTATGGACACAGATAACAGTGGAACTATCACTTTTGAAGAGTTGAAAGTTGGTCTCCCCAAATTGGGTAGTAAGCTTTCTGAGTCTGAAGTGAGGCAGCTGATGGAAGCGGCTGATGTAGATGGAAATGGAACAATTGATTACATTGAATTTATAACAGCCACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCATTTGAATATTTTGACAAGGATAAGAGCGGGTATATCACTAAGGAAGAGTTGGAATATGCACTGAAGAAGTATAATATGGGTGATGAAAACACAATAAAGGAGATCATTGCTGAAGTTGATGCAGACAATGATGGAAACATTAATTATGAAGAGTTTGTTGCCATGATGAGAAAAGGCAACCCAGAAACGGTGAAAAGCAGGCGTCGCAAGTAA 1545 0.4602 MGNCSGVPSAQNQLSSDGPGRAPPTNGLSVLPPNSEPTPPEPPLSSVLGRVLGRPLEDVRSTYIFGRELGRGQFGVTYLVTHKVTQQQFACKSIATRKLINRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAANLCRQIMKVVHSCHSMGVFHRDLKPENFLFLSKDDNSPLKATDFGLSVFFKPGDVFSDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENERGIFDAILRGHIDFVSKPWPSISSSAKDLVRKMLRADPRERLSAVDVLNHPWMREDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKVGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEREDHLYKAFEYFDKDKSGYITKEELEYALKKYNMGDENTIKEIIAEVDADNDGNINYEEFVAMMRKGNPETVKSRRRK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1566 514 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Acco11g1566 514 FunFam calcium-dependent protein kinase 1 149 328 - -
Acco11g1566 514 FunFam Calcium-dependent protein kinase 1 329 504 - -
Acco11g1566 514 CDD STKc_CAMK 63 320 - -
Acco11g1566 514 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Acco11g1566 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 62 496 - -
Acco11g1566 514 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
Acco11g1566 514 Gene3D - 333 504 - -
Acco11g1566 514 SUPERFAMILY Protein kinase-like (PK-like) 36 343 IPR011009 -
Acco11g1566 514 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Acco11g1566 514 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1566 514 SUPERFAMILY EF-hand 360 501 IPR011992 -
Acco11g1566 514 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Acco11g1566 514 MobiDBLite consensus disorder prediction 1 47 - -
Acco11g1566 514 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Acco11g1566 514 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Acco11g1566 514 MobiDBLite consensus disorder prediction 1 32 - -
Acco11g1566 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Acco11g1566 514 SMART efh_1 368 396 IPR002048 GO:0005509
Acco11g1566 514 SMART efh_1 475 503 IPR002048 GO:0005509
Acco11g1566 514 SMART efh_1 404 432 IPR002048 GO:0005509
Acco11g1566 514 SMART efh_1 440 468 IPR002048 GO:0005509
Acco11g1566 514 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Acco11g1566 514 Gene3D Transferase(Phosphotransferase) domain 1 149 332 - -
Acco11g1566 514 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1566 514 Pfam EF-hand domain pair 369 429 IPR002048 GO:0005509
Acco11g1566 514 Pfam EF-hand domain pair 439 501 IPR002048 GO:0005509
Acco11g1566 514 ProSiteProfiles EF-hand calcium-binding domain profile. 472 506 IPR002048 GO:0005509
Acco11g1566 514 Pfam Protein kinase domain 65 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1566 514 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Acco11g1566 514 FunFam Calcium-dependent protein kinase 1 65 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1566 Acco-ChrAcco11 30142010 30146070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1566 49 513 EF-hand Containing Proteins AT4G23650 80.645 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Acco11g1566 Pkinase 3.2e-72 CL0016