LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1548	ATGGCATTTCTACGCATTTTCTATTTTATTTGCCTACTGGATCTGACTCTCCGGCAAGGAAATGCGGAGCCTGTTGAAGATAAGCGAGCTTTGCTTGATTTTGTGAGCCAGTTCTCTCACACTCGCCCTCTAAATTGGAATGAGAACTCTTCTGTGTGTGCTAACTGGACTGGAGTCACTTGTAACGAGAATAAGTCCCGAGTAATAGCCGTTCGCCTGCCGGGAATTGGGTTTCACGGCGCAGTTCCACCCAACACAATTAGCCGCCTCTCAGCGCTGCAAATCGTGAGCCTCAGATCCAATTTTATCAGTGGGAGTTTCCCTTCTGATTTTTCTAAGTTAAAAAACCTGTCTGTGATATATCTTCAATTTAACAACCTGTCGGGTTCTTTACCGGATTTCTCAGTCTGGAAGAACCTTACCATTGTCAATTTGTCCAATAATCGTTTCAATGGCAGCATTCCTTTCTCAATTTCTAATTTAACTGAGCTTGCCGGTTTGAATCTCGCAAACAACTCGCTTTCTGGTGAAATTCCTGATGTCCAATTTCCCAGCTTGCAGCAGCTGAATTTGTCTAACAACAAGTTGAAGGGTACTGTGCCTAATTCTCTCCAGAGGTTTCCCATGTCAGCATTCCTCGGTAATAACATATCTTTGGGTAATTATCCTCACCTTTCTCCTGTACTTCCTCCTTCCTCCAAGCCATCTTCAAAATCCAAGAAACATGAAGGTCTCCGGGAAGCAGCCCTACTTGGAATTTCAATTGCTGTTGGTGTGCTAGCTCTTTTAGCATTTGGTTTTCTGATGTTTGTGTGCTTCTCAAGAAGCAGGGACGAAGACGGGTTCTCTGGGAAGTTGCAGAAGGGAGGAATGTCTCCAGAGAAGGAAGTTTCAAGAAATCAAGATGCGAATAATAAACTTGTTTTCTTTGAGGGATGTAACTATGCCTTTGACTTGGAGGATTTGTTAAGGGCTTCTGCTGAGGTACTGGGCAAGGGAACGTTTGGCACTGCATACAAGGCCATACTAGAGGATGCTTCCACAGTCGTCGTAAAGAGGCTGAAGGATGTGGCTGTTGGAAAGAGAGACTTTGAGCAACACATGGAGATTGTGGGAAGCCTTAAACATGATAATGTGGTTGAACTGAAAGCATATTACTACTCCAAGGATGAGAAATTGATGGTGTATGATTATTACAGTCAAGGGAGCCTCTCTTCTTTACTTCATGGTAAAAGAGGAGAGGATAAGGTGGCATTAGATTGGGATAGTCGACTTAAAATAGCACTAGGCACTGCAAGAGGGATTGCCCGTATCCACGCAGAGAATGGTGGAAAGATGGTGCATGGAAACATAAAATCTTCAAATATCTTTGTCAACTCCAAGCAGTATGGTTGTGTGTCTGATCTTGGGTTGGCCATGATAATGAGCTCACTTGCCCTCCCCATCTCACGCGCTTCTGGCTATCGAGCACCTGAAGTTACAGACACCAGAAAAGCAGCACAGCCTTCAGATATTTACAGTTTTGGAGTGGTGTTACTGGAGCTTCTGACTGGGAAATCCCCCATTCTTACTACAGGTGGGGATGAGATAGTCCACTTGGTGAGGTGGGTCCATTCAGTGGTGCGAGAGGAGTGGACAGCTGAAGTGTTTGACCTGGAACTGATGAGATATCCAAATATCGAAGAAGAGATGGTGGAGATGTTACAGATAGCCATGTCATGCGTGGCAAGGATGCCGGATCAGAGACCGAGGATCTCAGAAGTTGTAAAGATGATAGAAAATGTGAGACAACTTGATATGGAGAATCGTCCACCGCCTGGTGAGAGCCAAGCTGAAAGTGGAACACCACTACCGTCAGTGTTAGGTACTCATCACTAA	1878	0.4483	MAFLRIFYFICLLDLTLRQGNAEPVEDKRALLDFVSQFSHTRPLNWNENSSVCANWTGVTCNENKSRVIAVRLPGIGFHGAVPPNTISRLSALQIVSLRSNFISGSFPSDFSKLKNLSVIYLQFNNLSGSLPDFSVWKNLTIVNLSNNRFNGSIPFSISNLTELAGLNLANNSLSGEIPDVQFPSLQQLNLSNNKLKGTVPNSLQRFPMSAFLGNNISLGNYPHLSPVLPPSSKPSSKSKKHEGLREAALLGISIAVGVLALLAFGFLMFVCFSRSRDEDGFSGKLQKGGMSPEKEVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDASTVVVKRLKDVAVGKRDFEQHMEIVGSLKHDNVVELKAYYYSKDEKLMVYDYYSQGSLSSLLHGKRGEDKVALDWDSRLKIALGTARGIARIHAENGGKMVHGNIKSSNIFVNSKQYGCVSDLGLAMIMSSLALPISRASGYRAPEVTDTRKAAQPSDIYSFGVVLLELLTGKSPILTTGGDEIVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVARMPDQRPRISEVVKMIENVRQLDMENRPPPGESQAESGTPLPSVLGTHH	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1548	625	Gene3D	Transferase(Phosphotransferase) domain 1	399	605	-	-
	Acco11g1548	625	Pfam	Protein kinase domain	327	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g1548	625	FunFam	Probable inactive receptor kinase RLK902	24	182	-	-
	Acco11g1548	625	FunFam	pollen receptor-like kinase 1	293	398	-	-
	Acco11g1548	625	Pfam	Leucine rich repeat N-terminal domain	26	62	IPR013210	-
	Acco11g1548	625	PANTHER	OS05G0588300 PROTEIN	7	603	-	-
	Acco11g1548	625	MobiDBLite	consensus disorder prediction	600	625	-	-
	Acco11g1548	625	ProSiteProfiles	Protein kinase domain profile.	324	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco11g1548	625	SUPERFAMILY	Protein kinase-like (PK-like)	328	592	IPR011009	-
	Acco11g1548	625	SUPERFAMILY	L domain-like	38	207	-	-
	Acco11g1548	625	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	399	605	-	-
	Acco11g1548	625	Gene3D	Phosphorylase Kinase; domain 1	291	398	-	-
	Acco11g1548	625	Gene3D	Ribonuclease Inhibitor	137	224	IPR032675	-
	Acco11g1548	625	ProSitePatterns	Protein kinases ATP-binding region signature.	330	361	IPR017441	GO:0005524
	Acco11g1548	625	Gene3D	Ribonuclease Inhibitor	26	136	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1548	Acco-ChrAcco11	29919377	29922307	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1548	20	616	Receptor kinase-like Gene Family	AT4G23740	65.691	0.0	789

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Acco11g1548		Pkinase	9.1e-36	CL0016