Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1543 ATGACTGCGCATTCTATCAGATACACTCACCACACTAAACTCGTCTCGCCGGAGGAGCAACGCCGTCTGTGTGGAGGAATTGAGTATCCCCGAGTTGTTAGAATACGCGTGACAGACGGCGATGCGACGGATTCATCCAGCGATGAAGAAGGAGGGGCTGTCACGCGCCACCGGGGGAGGACGTTCGTCAACGAGATTACGATAACCCAAAACGATGTTGCTGCTAATAGGCCTGAGAGCAAGCGTCGGAAGGGTAATAGGATTAGAGGAATGGAAGGTCGGCGGGCGATGAAGGCGGCACCTGCGGGGAAGAAGTTCAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCGGAGATCAGAGATCCTCTGCGACGTGTTCGGTTGTGGTTGGGGACGTACGAAACTGCAGAGGAAGCTGCGATGGTATACGATCAAGCAGCGATTGAGCTGAGAGGAGCAGAGGCACTGACCAATTTCATAACGCCACCGGGAAAGGAGTGCTCGGAGGAGAAGAAATTGAGTTCCCCGAACTTTGTTCTTCAGTCTCAGAGTGGAAATCTGTCAGAGGAGGTTGAATCTGTAACAACCAAAGATGATACAATCAGTGAATGTCGGGACGAATCACCATTGTCCTCGTCAGCGTCAGGGCCATCGGAGAACTTATCACATTTTCCGGCCGATGTATTCGACTTCCAAACATCGTTGCCGGACCTATTTGTCGAAACGAATATTACAGAAAGCATCTACTCCGATGCGGCGTGGGTGAGTCCAACCGAAAACTTCGACCTGGGTTTCGATTTCGAGTCTGGTTTTGGATTCTCGAATTGGCACAGAGATGACTATTTCCAAGATATCGGCGATTTATTTGTTACAGATCCACTTGTTGCTCTTTGA 900 0.5111 MTAHSIRYTHHTKLVSPEEQRRLCGGIEYPRVVRIRVTDGDATDSSSDEEGGAVTRHRGRTFVNEITITQNDVAANRPESKRRKGNRIRGMEGRRAMKAAPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDQAAIELRGAEALTNFITPPGKECSEEKKLSSPNFVLQSQSGNLSEEVESVTTKDDTISECRDESPLSSSASGPSENLSHFPADVFDFQTSLPDLFVETNITESIYSDAAWVSPTENFDLGFDFESGFGFSNWHRDDYFQDIGDLFVTDPLVAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1543 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 205 - -
Acco11g1543 299 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Acco11g1543 299 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Acco11g1543 299 MobiDBLite consensus disorder prediction 183 221 - -
Acco11g1543 299 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Acco11g1543 299 CDD AP2 104 161 IPR001471 GO:0003700|GO:0006355
Acco11g1543 299 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Acco11g1543 299 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Acco11g1543 299 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Acco11g1543 299 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Acco11g1543 299 SUPERFAMILY DNA-binding domain 105 161 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1543 Acco-ChrAcco11 29879218 29880117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1543 31 299 AP2-EREBP Transcription Factor Family AT4G23750 39.339 8.05e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco11g1543 AP2 1.5e-13 CL0081