Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1535 ATGGCTGAGATAAGTGCCGATGTGTCCTTCGATCAAGTTCCACCGAGGAGGCAGCGAAGCCGAAGAGCGTTGAAGGACAAAAATCCCTCAACCAACGATGTCAAATCCTTGCCCAAGAAGCAGCCCGATTCACCACTGGTTTCTATGGAATCAGACGCCGCAAAGGAGAACCAATCGGGCGTCTCTGAATCTCAACCCCGATCTTCACCCAAGAAGGGTAAAGCTGCCTCCAAGAAACAGTCGAAGCAGTCTTTTGATAAAGATTTGCAAGAAATGCAGCAGATGCTGCAAAATTTGCGCCTCGAGAAGGAAAAAACTGAAGAGCTCTTGAAGGTCAAAGATGAGATATTGAAGCAGAAGGAGGAGGAGCTCGACGAGCGTGGCCGCGAGCAGGAGAAGCTTCAGATGGAGTTGAAAAAATTGCTGAAGATCAAGGAATTCAAACCCACCATGAATTTGCCTATGCTGAGAGAAAAGGAGCAAGAAAAAGACAAGAAGAAGAAGAATGGATGTGCCGTGAAAAGGCCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGCTGAGGTTAAGAAATCAAATCCAGAGGCAGAATTCAAGGATATTTCAAACATGTTAGGGGCTAAATGGAAGACTATCAGTGAACAAGAGAAACAGCCTTATGAGGAGAAATATCTTGTTGAGAAGGAAGCGTATCTGCGGGTAATCACAAAGGAGAGACGTGAAATTGAGGCGATGAAGCTCTTGGAAGAGGAGCAAAAGCAGAAGACTGCTATGGAATTGCTCGAACAGTATATGCTATTCAAACAAGAAACAGGGAAGGAAAGCAAGAAGAGCAGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTGTGTCAGCTTTTCTATTGTACACGAATGATAGGAGGGCAGCTATTCTTGCGGAGAAAAAGAGTATCTTGGAGGTTTCGAAGATTGCTGGTGAGGAGTGGAAAAACTTGACAGAAGATCAGAAGAGACCTTATGAAGAGATGGCGAAGAAGAACAAGGAGAAATATCTTCAAGAAATGGAGGCTTACAAACAGAAGAAGGATGACGAGGCTGTGAATATCAGGAAGGAAGAGGAGGAGCTAATGAAGCTTCAGAAAGAAGAAGCCTTGAAACTGCTGAAGAAGAAGGAGAAAACAGAGAATCTGATCAAGAAATCAAAGAAGAAGAGAAAGAGTAAGGAAGATAAGAATTGTGATCCAAACAGGCCAAAGAGACCAGCATCCTCATATCTGCTATTCAGCAAGGAAGCAAGGAAGAGCATACAGGAGGAACGGCCAGAGATCAATAACTCAACACTGAACTCCCTCATATCTGTGAAATGGAAGGAACTGAGAGAGGAAGAGAGAAAATTGTGGAACGACAAAGCTGCAGAGGCAATGGAGGCATACAAGAAAGAATTGGAGGCGTACAATAAATCGATGGCTGCTAAATTGGACCAGAACACACAAGATTGA 1488 0.4402 MAEISADVSFDQVPPRRQRSRRALKDKNPSTNDVKSLPKKQPDSPLVSMESDAAKENQSGVSESQPRSSPKKGKAASKKQSKQSFDKDLQEMQQMLQNLRLEKEKTEELLKVKDEILKQKEEELDERGREQEKLQMELKKLLKIKEFKPTMNLPMLREKEQEKDKKKKNGCAVKRPSPPYILWSKDQWAEVKKSNPEAEFKDISNMLGAKWKTISEQEKQPYEEKYLVEKEAYLRVITKERREIEAMKLLEEEQKQKTAMELLEQYMLFKQETGKESKKSRKEKDPLKPKHPVSAFLLYTNDRRAAILAEKKSILEVSKIAGEEWKNLTEDQKRPYEEMAKKNKEKYLQEMEAYKQKKDDEAVNIRKEEEELMKLQKEEALKLLKKKEKTENLIKKSKKKRKSKEDKNCDPNRPKRPASSYLLFSKEARKSIQEERPEINNSTLNSLISVKWKELREEERKLWNDKAAEAMEAYKKELEAYNKSMAAKLDQNTQD 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1535 495 Coils Coil 82 137 - -
Acco11g1535 495 Gene3D High mobility group box domain 394 494 IPR036910 -
Acco11g1535 495 Gene3D High mobility group box domain 157 261 IPR036910 -
Acco11g1535 495 Gene3D High mobility group box domain 272 368 IPR036910 -
Acco11g1535 495 MobiDBLite consensus disorder prediction 51 71 - -
Acco11g1535 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 289 355 IPR009071 -
Acco11g1535 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 414 482 IPR009071 -
Acco11g1535 495 SMART hmgende2 288 356 IPR009071 -
Acco11g1535 495 SMART hmgende2 413 483 IPR009071 -
Acco11g1535 495 SMART hmgende2 172 242 IPR009071 -
Acco11g1535 495 MobiDBLite consensus disorder prediction 14 33 - -
Acco11g1535 495 SUPERFAMILY HMG-box 410 485 IPR036910 -
Acco11g1535 495 CDD HMG-box_AtHMGB6-like_rpt1 174 241 - -
Acco11g1535 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 491 IPR044601 GO:0003677
Acco11g1535 495 SUPERFAMILY HMG-box 276 361 IPR036910 -
Acco11g1535 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Acco11g1535 495 MobiDBLite consensus disorder prediction 152 171 - -
Acco11g1535 495 MobiDBLite consensus disorder prediction 1 100 - -
Acco11g1535 495 SUPERFAMILY HMG-box 160 236 IPR036910 -
Acco11g1535 495 Coils Coil 464 491 - -
Acco11g1535 495 MobiDBLite consensus disorder prediction 152 178 - -
Acco11g1535 495 Coils Coil 337 407 - -
Acco11g1535 495 Pfam HMG (high mobility group) box 289 355 IPR009071 -
Acco11g1535 495 Pfam HMG (high mobility group) box 173 235 IPR009071 -
Acco11g1535 495 Pfam HMG (high mobility group) box 414 482 IPR009071 -
Acco11g1535 495 MobiDBLite consensus disorder prediction 391 420 - -
Acco11g1535 495 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1535 Acco-ChrAcco11 29815864 29818196 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco11g1535 HMG_box 2.9e-16 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1535 11 29815864 29818196 Acco11g1535 11 29815864 29818196 ECH