LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1532	ATGGAGGATAATAGGAGGTGGGAGCGGAGCACGCTTACGAATGAGCTGCTTCAAGGAATGGAGGCAGCGAGGAAGTTGATGGCAGAATTTAGGACAGAATCTTCAGTAGAGACCAGGGATTTGCACGTCCAAAGGATATTATCATCTTATGAAAAGGCCCTGCTAATTCTGAAATGGAATGCATCAAACTCAAATACCAATTCTCTTCCCATGGGGCCAGTATTACCTGGTTTGCCACCAGAGTCTCCAATATCTGTCAACGTAAGTCCTTTCACAGATGACATTGATGGGGATCATCCTGAGCTTAAACCTGATTCCAAGAAAAGAAAGATGATGCCAACATGGATGGAACAAACAAAGTCGAGCTCTGAGGCTGCCCTTGAAGGACCCCAAGATGATGGCTTCAGCTGGAGAAAATATGGACAGAAAGACATCCTGGGAGCCAAATATCCTAGAAGTTACTATAGGTGCACCTTCCGCAAGACTCAGAACTGCTGGGCCACGAAGCAGATACAAAGATCAGATGAAGACCCTTCCGTATTTGACATCACTTATCGAGGAAGGCATACTTGTTGCCTGGGAAATAATGCTCCTAAATCTCCAGACCAACAAGACAAAATACGTAATTATGAAAGTGACATTCGCCCTCACGAGCCATTACAAGAGGGCCTAGTGAAATTCAGAAATAACTTGAGTGTCAATACAGATAACCTTAAAAATGAGGAGATGGCAAATCCTTTTGCTTTCCTTTCAACTTCCTCTGGATACATGACACCAGCAGAAAGTCACAGTTTTCCTTCCTTGGCACTAGAGAATGATCCCTTCTGGGGGAACCTTTCACAAACAGACTTGCTATCTCCAACCACGCCAGAATCACACTATTTACCATCCCTGTCTTTCAAGATGGTTGATTTCCATGGCCTCAAAAACCAGCCGTGCTCGGAATCTGACATTATTGAGATAATTTCAGCCAACACATCAGCCAGCAATTCTCCAATTCTCGATTTTAATTTCCCTATTGATCCAGCGCAGATTGATCCAAATTTCCCTTTTGACATCCCGGGATTTTTCCCATGA	1077	0.4392	MEDNRRWERSTLTNELLQGMEAARKLMAEFRTESSVETRDLHVQRILSSYEKALLILKWNASNSNTNSLPMGPVLPGLPPESPISVNVSPFTDDIDGDHPELKPDSKKRKMMPTWMEQTKSSSEAALEGPQDDGFSWRKYGQKDILGAKYPRSYYRCTFRKTQNCWATKQIQRSDEDPSVFDITYRGRHTCCLGNNAPKSPDQQDKIRNYESDIRPHEPLQEGLVKFRNNLSVNTDNLKNEEMANPFAFLSTSSGYMTPAESHSFPSLALENDPFWGNLSQTDLLSPTTPESHYLPSLSFKMVDFHGLKNQPCSESDIIEIISANTSASNSPILDFNFPIDPAQIDPNFPFDIPGFFP	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1532	358	MobiDBLite	consensus disorder prediction	90	130	-	-
	Acco11g1532	358	FunFam	WRKY transcription factor 53	117	194	-	-
	Acco11g1532	358	Gene3D	WRKY domain	117	193	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1532	358	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	8	260	IPR044810	GO:0003700
	Acco11g1532	358	SMART	WRKY_cls	131	193	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1532	358	SUPERFAMILY	WRKY DNA-binding domain	130	191	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1532	358	MobiDBLite	consensus disorder prediction	94	114	-	-
	Acco11g1532	358	ProSiteProfiles	WRKY domain profile.	126	189	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco11g1532	358	Pfam	WRKY DNA -binding domain	132	191	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1532	Acco-ChrAcco11	29783188	29784450	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1532	7	350	WRKY Transcription Factor Family	AT4G11070	36.857	2.61e-60	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco11g1532		WRKY	1.1e-25	CL0274