LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1524	ATGGAGGGATTTCAAGATAGAGATACTCAGCTTGAACCACATAACGTCGCTGATATAGGCTCATCTCTGTCCAATCTGATATTATCAGGTGGGACAAACCCCTTAGATTCTATTTTCTCTCACTGCCCTCAAACAAACACCACAAGCAACCCCATGCTTGATGCCTTAGGTTCGTGCGGTTTTGAGCCTCTGGGCTCGTCGGTGTATCTTCGTCAAAGAGATATTTTGCAGAAATTCTACGAGGACAACCGAGTGAGTAGTTCATTCGGTGGTCTATCATCGACAAATCAACGTCTTAACTATGCAGCACCAACATCGTACTCTGACATGAACCCCTGTAAAAAAAAGCTATACAGGGGAGTGAGACAGAGACATTGGGGAAAATGGGTTGCAGAAATTAGACTTCCTCAGAACAGAATGAGAGTGTGGTTAGGCACTTATGAAACTGCCGAAGCTGCTGCTTATGCTTACGATCGTGCGGCTTATAAGCTCCGAGGCGAATATGCTCGTTTGAATTTCCCCAATCTAAAGGACCCCAGTAAGTTAGGATTCGGAGATAGCTCCAGATTAAATGCTCTGAAAACCTCTGTAGATGCTAAAATTCAAGCTATCTGTCAAAAGGTGAAGAGAGAGAGAGCCAAGAAGAATAGCGCTAAGAAGCAGGCTAATCCGATTCCCAGCCCAGAACAGAGTGAGAAATCACAAAAGATTGAGTCTTCATCTTGTTCATCATCGTCGTTACCGTTGTCCCCATTAGTTTTTGATGATAACTGGACAGACGAGTTCATTTCGCCGACGATTTCAGAGGACGGAATATGGAAGGGAGAGGACTCGCCGTCCACCGTCTCAACTGATTTTCCGACAGTGGTAACAACAGAGGAATCAGAATTTGTAGGTTGTTCCCTGGCGAGGATGCCTTCCTTTGATCCCGAGTTAATCTGGGAAGTCCTTGCCAATTAA	960	0.45	MEGFQDRDTQLEPHNVADIGSSLSNLILSGGTNPLDSIFSHCPQTNTTSNPMLDALGSCGFEPLGSSVYLRQRDILQKFYEDNRVSSSFGGLSSTNQRLNYAAPTSYSDMNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDSSRLNALKTSVDAKIQAICQKVKRERAKKNSAKKQANPIPSPEQSEKSQKIESSSCSSSSLPLSPLVFDDNWTDEFISPTISEDGIWKGEDSPSTVSTDFPTVVTTEESEFVGCSLARMPSFDPELIWEVLAN	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1524	319	Gene3D	AP2/ERF domain	117	175	IPR036955	GO:0003700\|GO:0006355
	Acco11g1524	319	SMART	rav1_2	117	180	IPR001471	GO:0003700\|GO:0006355
	Acco11g1524	319	PRINTS	Ethylene responsive element binding protein signature	118	129	IPR001471	GO:0003700\|GO:0006355
	Acco11g1524	319	PRINTS	Ethylene responsive element binding protein signature	140	156	IPR001471	GO:0003700\|GO:0006355
	Acco11g1524	319	MobiDBLite	consensus disorder prediction	212	247	-	-
	Acco11g1524	319	Pfam	AP2 domain	118	167	IPR001471	GO:0003700\|GO:0006355
	Acco11g1524	319	ProSiteProfiles	AP2/ERF domain profile.	117	174	IPR001471	GO:0003700\|GO:0006355
	Acco11g1524	319	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	54	317	-	-
	Acco11g1524	319	SUPERFAMILY	DNA-binding domain	117	174	IPR016177	GO:0003677
	Acco11g1524	319	MobiDBLite	consensus disorder prediction	220	247	-	-
	Acco11g1524	319	FunFam	Ethylene-responsive transcription factor 2	116	175	-	-
	Acco11g1524	319	CDD	AP2	116	176	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1524	Acco-ChrAcco11	29735126	29736085	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1524	16	319	AP2-EREBP Transcription Factor Family	AT1G64380	49.405	1.33e-70	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco11g1524		AP2	4e-13	CL0081