Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1506 ATGATCAGGCTCGGAGACGCCGGAGATTTTGTCGTAAAAAAGATCTCCTTGAAGGACCACCAAGTTTTTGTGAACGACCCAAATAGCTGCCTTCCCTTCCGATTCCTCAACGGCGACTTGGACTTTCGTCTTAAAGGTTCGCCTTTCCAATGGATCCCCAATAAATACGTTTACTTCGCCAACGTTGACTTTCTTAATTGTTCGGCCCCACTGCCACGTAACTCCCTTCATCGTCTCGCTCACAAGAAAATACCTTGCCTCAGCGGAACCGGCGCCGACAACTTCACGGTGATCGCCGTTTGGTTGGACGATCTTCTGCCAACATCCACGCCGTTCCCTCCAGATCAATGCCATTATATGTCCTCTACTTTACTTCCGGTTGAGGGTTTGCAAGTATGGGACCACCTTTACTCCGATCTTGGGTTCAAATGGAACAACTGTACGTATCCGGATAATCCTGATGATGAAGACAGTCGTACTCCTGCTTGCTATAACAGTGCTCCAGACCAAGAACCTGCGACCGGTCACATATATTACAAATTATTAGCGGTGGGAGGAGCTGGAGCATTATTCTTTTGTGTGGCGGGACTTGCACGCTTATTAGGGGTTATGGCAGAGCGGTCGGACGGTGGACGGCGGAGGATGGACGGATCAGAGTCGGATAGAAGAACTATGGCGGAATCAGTTGACGTGGGAATGGGGCTTGATGAGTCAACCATTGAACAGTATCCGACAACGCAAGTTGGTCAAAGTGGAAGATTGCCCAATCCGACAGGTGACAACATTTGCTCTATATGTCTGAGTGAGTATGAGCCAATGGACACATTAAGAACCATTCCTCACTGTGATCACTATTTTCATGCCCATTGTATAGATAGCTGGCTCAAGAAGAAGGGCACGTGCCCTTTGTGTCGTTATCTTCCCCACGCTTCTACTCCATTGTACCTCTCTTCCTCGCATTCTCATCGATTGTTGAACCCCTCTTAA 987 0.4843 MIRLGDAGDFVVKKISLKDHQVFVNDPNSCLPFRFLNGDLDFRLKGSPFQWIPNKYVYFANVDFLNCSAPLPRNSLHRLAHKKIPCLSGTGADNFTVIAVWLDDLLPTSTPFPPDQCHYMSSTLLPVEGLQVWDHLYSDLGFKWNNCTYPDNPDDEDSRTPACYNSAPDQEPATGHIYYKLLAVGGAGALFFCVAGLARLLGVMAERSDGGRRRMDGSESDRRTMAESVDVGMGLDESTIEQYPTTQVGQSGRLPNPTGDNICSICLSEYEPMDTLRTIPHCDHYFHAHCIDSWLKKKGTCPLCRYLPHASTPLYLSSSHSHRLLNPS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1506 328 ProSiteProfiles Zinc finger RING-type profile. 263 305 IPR001841 -
Acco11g1506 328 SMART ring_2 263 304 IPR001841 -
Acco11g1506 328 SUPERFAMILY RING/U-box 260 310 - -
Acco11g1506 328 Pfam Ring finger domain 262 305 IPR001841 -
Acco11g1506 328 CDD RING-H2_EL5-like 262 305 - -
Acco11g1506 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 309 IPR013083 -
Acco11g1506 328 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 306 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1506 Acco-ChrAcco11 29547783 29549818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1506 2 308 C3H Transcription Factor Family AT2G25410 31.307 9.32e-36 131