Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1504 ATGACCACCTTAATACCCTTATTCCTACTATTATTAACAATCCAGTACGCAAGTGGGTCTCAAGAACCAGATGCTGCATGCCCAGCCACGTCTTGTGGAGGAATCGAAATCAAGTTCCCTTTCGGCTTAAAAGGAACCAACCAGAGTAGTAGCCGATGTAGCTACCCTAATTTCAGTGTTTCCTGCAACAATCAGAGCCAAACCATCCTCTCGCTTCCAAATTCTTCCGGCGACTTGCTCATCAAGGGCATCGATTACACCTTACAAACCCTTTTCGTCAACGATCCTAGTCAATGCCTACCCAGACGATTCTTGCAGGATCGTCTCAGCCTTTCTTCTTCTCCCTTCAATTTTGACCCTGCTATGTACCATGTCATCAGCCTCACTTTCCTTCGATGCCCTTATAATCTCACCCAAAGTGACCAACTCCCTTCAGTTCATTGTCTTAGCGATCTCGCTAATTCATCTTTTGCTGTTACGTACCTTTGGGCGCGATCAATTCCTCCGCTCCTGAATGAATCGTGTGAGGTTATTAATTCCTCTGTTCCTTACCCGATTTCTAACACTGACCCGTGGCCTTTCGGGGTCGATATGGGCGATGATTTGCAGTTGACTTGGGGCGAGCCACGGTGTGGCCGTTGTGAATACCGGGGACAAGACTGTGGGTTCGCCGGCGATTTGGATCTCCAAATAGCATGTTTCTCTCGTCCCCATGAAAGCTCGGGTCTTCCGAGAGGTATTAAATATGGGCTAGCATTAGGAGTGGGAGTCCCTGGACTCTTATGTTTAATAGGGCTCAGTTGTTTCATGTGTGGCCAGCTACGACGTCGTCGGAATGTCAGGCCCAGCATAGATCTCCCCATCACATCATATGTGGTCCAGTCTGGCCTATTCAGAATGGGCCTAGACGGGTCCACAATAGAGAAGTATCCAATGACTCTTCTTGGCGAGAGTAAGAGGCTACCCAAGCCCAACGACAACACTTGCTCAATATGCTTGTCGGAGTATGAGCCCAAAGAGACATTGAGAACCATACCCGATTGCAGCCATTATTTTCATGCACACTGTATAGATGAATGGCTCAGGATGAATGCCACGTGTCCCGTTTGCCGGAACTCAGCTGCACCAACACCTTCTACTTCTTCATCGTCTCTGTCTCCTCCTTCCTCCGTATTCTCTTCACATTAG 1188 0.4823 MTTLIPLFLLLLTIQYASGSQEPDAACPATSCGGIEIKFPFGLKGTNQSSSRCSYPNFSVSCNNQSQTILSLPNSSGDLLIKGIDYTLQTLFVNDPSQCLPRRFLQDRLSLSSSPFNFDPAMYHVISLTFLRCPYNLTQSDQLPSVHCLSDLANSSFAVTYLWARSIPPLLNESCEVINSSVPYPISNTDPWPFGVDMGDDLQLTWGEPRCGRCEYRGQDCGFAGDLDLQIACFSRPHESSGLPRGIKYGLALGVGVPGLLCLIGLSCFMCGQLRRRRNVRPSIDLPITSYVVQSGLFRMGLDGSTIEKYPMTLLGESKRLPKPNDNTCSICLSEYEPKETLRTIPDCSHYFHAHCIDEWLRMNATCPVCRNSAAPTPSTSSSSLSPPSSVFSSH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1504 395 MobiDBLite consensus disorder prediction 375 395 - -
Acco11g1504 395 ProSiteProfiles Zinc finger RING-type profile. 329 371 IPR001841 -
Acco11g1504 395 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Acco11g1504 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 376 IPR013083 -
Acco11g1504 395 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 373 IPR046948 -
Acco11g1504 395 SUPERFAMILY RING/U-box 323 377 - -
Acco11g1504 395 Coils Coil 395 395 - -
Acco11g1504 395 Pfam Ring finger domain 327 371 IPR001841 -
Acco11g1504 395 CDD RING-H2_EL5-like 329 371 - -
Acco11g1504 395 SMART ring_2 329 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1504 Acco-ChrAcco11 29533716 29538152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1504 27 377 C3H Transcription Factor Family AT2G46495 35.933 6.10e-57 188