Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1487 ATGGGATGTCCCAGAATAAAAATTAGAGTTTATCTGAGCGCTCTTACGAGGGAAAACAAACCGCGGCGAAACGGCCACGCAGATTCGTCGAAGCCTGCTTTGCCAAACAATCGTCGGAATTTGGACTGGGTTAGGGCTCAGAAGTTACCGTTTCCCTTGATAAAAACAGCTACTTCAATGGAAGAGGATTTCGTCACCAATGGCATGTTCATAGAAGAACCCTCTGAGGCTGATGAAAATGCGAACTATGATAATTTATTTATTGAAGGGGAAAAGTGTGGAATTTGCATGGATACTGTCATTGACAGGGGAGTTGTGGATTGCTGCCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTTCCATCACAAACCTCTGCCCACTCTGCCAGAATGAGTTTCAGTTGATCACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAATCGAAGATGACGTGTTATCCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCAGCAATGACCGAAGGTGATTTGAGCCTTGATACATCGATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGAAGTTACATGGTTATGCCCAAGATGTGTGCCGGATAAAGTTACTGATAAGATGGCTGCAAGTTCATTAGAGAAGACAACTATGGAAATTAACCCAGAAAACGGTGACAAGGAAGATCAGGCTGAGGATTCTTTTTCAGGCAAAGTTTCTGTATCTGTTGCTGATGCTGGGGAGACAGCTGTTGTTGTCTCTTTAGTTGAAGGAAACCAATGGATTCCAGTATCAAGAGAGAAGGGTTTGTCAACACTTGAAGCTAGCAAGAATCCAATGACTGAATCATGTGTTTCCATACCTGACGCAAATAATCACCAAAGTAATATGGAGAAGACTATTAATTCACCGGGGAAGCAGCAGGAGCTGGAGCTGTCCTTATCGCATGGTGTGATCCGTAGCTTGTCCTCTAACACCATAGGGCCTGATGATTTGAATAAAGGAACTCATGGAGAAAGGAGTGATCCAAGTAGCTTAAGCGGAACCAATATATTAAATGAATCTCATGACAGAGCTAGTGTATCTAGAAATGGATCTGACATGGGTCTTCAACTCGGTTTGTCAGTTGGCTCCTTTTTATGTGTTGATGACACTGACATGAACGCATCAAGAGATGAAGAAACTAATCTCCAGCTGTCAAATTCTGAAGAATTTAAATTGAACGGAGATGAAGTGGAACCAAATGCTCTTAAGGATAATGCCAGAGTAATGGGGGAAAAGAGAAAGCATGCTGATTACAGTAATGATGAGGTTCATATAGAAGTTGATAGAGATGCCGAGCTCAAACCTGAAGTTGAAGTGTCGCAAAAGAAACTTAGAACTGATGGTAGTCCACTGATTAATCATGAGAGTGTAGCATGTGATCCTCTTTCAGATAATACCAAAGCAAGCCCTTCTACTACACCTATTTCCAGACACGATGGTGTAAAACATCACACAACACAGGAGAATGCCGCATCAGATATAATGAGTATAGTTAAAGGCACGAAGTGGAAGCCTCCAAAGGGAATTTGTGGCTCAAAATCTAGTAACAAGTTATCTAAAAACAATGAAAACATGGCGGGTTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCAGATCATGGGGAGTCATCCTTAGTTCAAAACCTAAGGGAAGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTAAAAATTTTGAAGAAAATCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCAGCTGTTGCAGGGCCTAAAAATGAACCTCTAAATAAGCTGCCCCCTATGGCTTTGAAGTCTAAGAAGTCAATGTTGCAGAAAGGAAAAGTTCGTGAACATTTAACCAGGAAAATTTTTGGGACCTCAAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATCAGAGCAACAAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTGGATCTTCTTAGAAAGAGTTCAGAGAGTGCAGAATCGAGAGAGGGTCCTGAAGGTCAGGCCAAAAATTCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGAAAAGATGATGTCAAGCCACTTTCTGTTGTTGAAACTGACGCTAACTCAGAGCAGAATAAAAAGCCTAACCTTTCAGGAAGAGCATCAAATCAGTCTCTTGATGATAGTCCTATTAAAGCAAAAGAGGTAAATAATATTTTACCAAAGGGCAGAGATTGTTCAGCTGAAAATAAAGTAAATAAGAAGATTGTACATAGCTCTGTTGTTGGTAATTTAACTTCTGGTAAAGTACCTTCAAGCAGACACTCAGAAGGGGCAACAACTTCTTGCCCTGGTGGCTCCAGAGTTGACTCAAAGGAATCAAGCGTTAAATCAGATTGTATAAAGAGTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGAAAAACAGCTGCTACTTGCAAGAAAATGACAAATGACAGTCAGGGAGATAACGCAATTCTTGGAGGAAATTATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCCAGTCGCCACAATAAAATTCCTATGCCAGTTAGGCAGACACAACTTTACCGCCTGACTGAACACTTCTTGAGGAATGCGAATCTGTCGGTCATTCGCCGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTGGCTGACAGATCAAACAGCAAGCTAGTATATCTGAATCTCTGTTCACAGGAGCTCTTGCACCGCTCAAATGGTAGAAAATCCAGTGGAGCAACAGATATAACTAAGCAGGTCTCATCACCTGTCCCTACTGATAGATCAGAACAAAATACTGATGATGATCTTTCAACTGACCCTGCTGTTCAGATGGCCCTTAAAAATGCTGGTCTTTTGTCTGATTCTCCTCCTTGTAGTCCAAGTGAGAAAGGAGAAAAACCCGATAAAGAAGTTGATCTTTCAGGGCCTGATAATATTCTCGAACTGGATTTTCAACCAGAGATGGATATTTATGGGGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAGGTGATGCCAGGGGCTTATATTCACAAGAAGAAGAAAGCGAGTCAAAAATGAAACTCATTTTCTCTACCATGAACTTGAAGAATTCAGATGCTGTTTTGGGTATGGATTCTGAGAGATTGGAAAACAATGAAGTTCCAGGAGGTCCCTCCTGCTCATCAAATCATGATGATGCAGCCAATGCGGACCCTGCTATTAATGCAGAGCCTGGCAATTCTCCTTCTGCTCCTTCCGAGGCCTTTCCCAGTGAGCCCTGTGATGCAGAATGCGAAGAATTATATGGTCCAGAGAAAGAACCACTTGCAAAAAAATTTCCGAATGAGGAATTTATAACACCACACGGAGAGGACAAATCAGGAACTTCAACTGAAGGCAATGGTTGTCATAGTAAAGTAAAAGCATCAGACCAAGCAGTAAATGCATCTGAATCTGGAAATGACAAACTTGCAAAGAATATACCGGTCACTGTGATTGCTGACAATTCATCTAATGCATCTGATGTTAGTGAAAATTTACAGAGGAAGGGCGAGAAATCTGATACCGCTCCTGAGAAGTCTGATTCTACAAATCATGTAGTTAGAAAGGTTGAAGCCTATGTCAAGGAGCATATCAGGCCACTGTGCAAGAGTCGGGTGATCACAGCTGAACAGTACAGGTGGGCTGTCTCAAAAACGACGGAAAAGGTTATGAAATACCATTGCAAGGCCAAGAATGCCAATTTCCTCATAAAGGAAGGCGAGAAGGTGAAGAAACTCGCAGAGCAGTATGTTGAAACAGCTCAACATGATAGGAAAAATTGA 4074 0.4138 MGCPRIKIRVYLSALTRENKPRRNGHADSSKPALPNNRRNLDWVRAQKLPFPLIKTATSMEEDFVTNGMFIEEPSEADENANYDNLFIEGEKCGICMDTVIDRGVVDCCQHWFCFACIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKIEDDVLSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSAMTEGDLSLDTSIACDSCDIWYHAFCVGFDPEGTSEVTWLCPRCVPDKVTDKMAASSLEKTTMEINPENGDKEDQAEDSFSGKVSVSVADAGETAVVVSLVEGNQWIPVSREKGLSTLEASKNPMTESCVSIPDANNHQSNMEKTINSPGKQQELELSLSHGVIRSLSSNTIGPDDLNKGTHGERSDPSSLSGTNILNESHDRASVSRNGSDMGLQLGLSVGSFLCVDDTDMNASRDEETNLQLSNSEEFKLNGDEVEPNALKDNARVMGEKRKHADYSNDEVHIEVDRDAELKPEVEVSQKKLRTDGSPLINHESVACDPLSDNTKASPSTTPISRHDGVKHHTTQENAASDIMSIVKGTKWKPPKGICGSKSSNKLSKNNENMAGLRVKKIMKRAPDHGESSLVQNLREEIREAVRNKSSKNFEENLFDTKLLAAFRAAVAGPKNEPLNKLPPMALKSKKSMLQKGKVREHLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCIRATKPEKIETLKSVLDLLRKSSESAESREGPEGQAKNSILSRLYLADTSVFPRKDDVKPLSVVETDANSEQNKKPNLSGRASNQSLDDSPIKAKEVNNILPKGRDCSAENKVNKKIVHSSVVGNLTSGKVPSSRHSEGATTSCPGGSRVDSKESSVKSDCIKSDKRKWALEVLARKTAATCKKMTNDSQGDNAILGGNYPLLAQLPADMRPVLAPSRHNKIPMPVRQTQLYRLTEHFLRNANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSNGRKSSGATDITKQVSSPVPTDRSEQNTDDDLSTDPAVQMALKNAGLLSDSPPCSPSEKGEKPDKEVDLSGPDNILELDFQPEMDIYGDFEYDLEDEDYIGAGDARGLYSQEEESESKMKLIFSTMNLKNSDAVLGMDSERLENNEVPGGPSCSSNHDDAANADPAINAEPGNSPSAPSEAFPSEPCDAECEELYGPEKEPLAKKFPNEEFITPHGEDKSGTSTEGNGCHSKVKASDQAVNASESGNDKLAKNIPVTVIADNSSNASDVSENLQRKGEKSDTAPEKSDSTNHVVRKVEAYVKEHIRPLCKSRVITAEQYRWAVSKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYVETAQHDRKN 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1487 1357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 169 IPR013083 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 826 855 - -
Acco11g1487 1357 PANTHER RING FINGER PROTEIN 41, 151 174 1348 - -
Acco11g1487 1357 Coils Coil 604 624 - -
Acco11g1487 1357 ProSiteProfiles Zinc finger RING-type profile. 93 132 IPR001841 -
Acco11g1487 1357 SUPERFAMILY RING/U-box 82 138 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 503 544 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 364 395 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1047 1062 - -
Acco11g1487 1357 SMART PHD_3 191 243 IPR001965 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1130 1238 - -
Acco11g1487 1357 ProSiteProfiles Zinc finger PHD-type profile. 125 245 IPR019787 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 766 791 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1207 1238 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 517 534 - -
Acco11g1487 1357 SUPERFAMILY FYVE/PHD zinc finger 208 247 IPR011011 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 826 853 - -
Acco11g1487 1357 Pfam Ring finger domain 92 132 IPR001841 -
Acco11g1487 1357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 263 IPR013083 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1036 1062 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1262 1280 - -
Acco11g1487 1357 Pfam PHD-finger 208 244 IPR019787 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1182 1206 - -
Acco11g1487 1357 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 1252 1280 - -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 990 1013 - -
Acco11g1487 1357 SMART ring_2 183 242 IPR001841 -
Acco11g1487 1357 SMART ring_2 93 131 IPR001841 -
Acco11g1487 1357 MobiDBLite consensus disorder prediction 990 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1487 Acco-ChrAcco11 29373635 29383345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1487 88 135 C3H Transcription Factor Family AT2G39100 37.255 3.77e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco11g1487 PHD 3.9e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1487 11 29373635 29383345 Acco11g1487 11 29373635 29383345 ECH