Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1483 ATGGGGCTTGAAGAAATCACTATTCATACCATATTTACGTTTGATATACAGACGGATTTTGGATTTAAGAGGTGGTTTGCTCACAATTTTAATACAATTGTCTTCAATGATAATGGAAACATATTGTCGCATCAGTGTCACTGTCGCTCGCTGAGTGCTCTGCCAGACATGGACGCTGAAATCAAAGGACGAATCGAGACCACTGTTCGGAGGATTCTACAGGGATCAAACATGGACGAGGTCACCGAATCCAAAATCAGGAAGCAGGTTGCCAAAGAACTCGACCTCGACATGTCGCAGCCTCAATACAAAGCCTTCGTGAAGCAGGTTGTGGAGTGTTTTATTCAGGAAAAGCAAGAGGAACCGGAGGAGGAAGAAGAAAATTCGCAAGAAGAAACTTACCAGGACCAGGAGTACGATGATGAGGGCAATCCTATTATCTGCAAGCTTTCAGCTCAGAGAAGGGTGACGATTCAAGAATTCAGAGGGAAAACACTGGTCTCTATCAGGGAGTACTATAGAAAGGACGGTAAAGAACTTCCTTCTTCCAAAGGAATAAGTTTGACAGAAGAGCAGTGGTCGGCCTTGAAGAAGAATATACCTGCCGTAGAAAAAGCCATTCAGAAACTGGAGTCGGACATGTGA 645 0.4403 MGLEEITIHTIFTFDIQTDFGFKRWFAHNFNTIVFNDNGNILSHQCHCRSLSALPDMDAEIKGRIETTVRRILQGSNMDEVTESKIRKQVAKELDLDMSQPQYKAFVKQVVECFIQEKQEEPEEEEENSQEETYQDQEYDDEGNPIICKLSAQRRVTIQEFRGKTLVSIREYYRKDGKELPSSKGISLTEEQWSALKKNIPAVEKAIQKLESDM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1483 214 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 61 213 IPR045125 GO:0003713|GO:0060261
Acco11g1483 214 MobiDBLite consensus disorder prediction 119 141 - -
Acco11g1483 214 Pfam DEK C terminal domain 64 112 IPR014876 -
Acco11g1483 214 SUPERFAMILY ssDNA-binding transcriptional regulator domain 147 210 IPR009044 GO:0003677|GO:0006355
Acco11g1483 214 Gene3D - 58 126 - -
Acco11g1483 214 Gene3D Transcriptional Coactivator Pc4; Chain A 137 214 IPR009044 GO:0003677|GO:0006355
Acco11g1483 214 SUPERFAMILY DEK C-terminal domain 64 115 - -
Acco11g1483 214 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 59 116 IPR014876 -
Acco11g1483 214 MobiDBLite consensus disorder prediction 119 139 - -
Acco11g1483 214 Pfam Transcriptional Coactivator p15 (PC4) 148 199 IPR003173 GO:0003677|GO:0006355
Acco11g1483 214 FunFam RNA polymerase II transcriptional coactivator KELP 137 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1483 Acco-ChrAcco11 29347437 29351783 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Acco11g1483 PC4 3e-24 CL0609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1483 11 29347437 29351783 Acco11g1483 11 29347437 29351783 ECH