Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1476 ATGTTGAATCGTGGAGGGTCTTTTTCGATGTCTTCAGCTGAAGGTGGTGGTGGTGGGGATGATCTGTATGAAGAACTATGGAAGGCCTGTGCAGGACCTCTTGTCGACGTTCCTCGGGCCAACGAGAGGGTGTTCTATTTTCCTCAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAACTTAATCATAGGATTCCGGTTTTCAACCTTGATTCTAAGATCCTTTGTCGCGTGGTGAACGTCCATCTACTGGCTGAGCCAGAAACTGACGAGGTTTACGCACAAATTACTCTGGTGCCTGAATTCAATCAAAATGAGCCTACCAGCCCAGATCCATGCTCCGCCGAACTTCCAAGGCCAGCAGTTCATTCATTCTGCAAGGTTTTGACGGCATCTGATACAAGCACCCATGGTGGGTTCTCTGTTCTTAGAAAACACGCCACTGAATGCCTTCCTCCTCTGGACATGTCCCAACCAACCCCTACTCAGGAATTGGTTGTCAAAGATCTTCACGGTTATGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCTCGTAGGCATTTGCTCACAACTGGATGGAGTACTTTTGTTACTTCAAAGAGATTAGTTGCTGGAGATACCTTCGTGTTTTTAAGAGGGGTCAATGGAGAATTACGTGTTGGAGTGAGGCGTCATGCTCGTCAGCAGAGTAGCATGCCATCGTCTGTAATTTCCAGTCAGAGTATGCACCTAGGAGTTCTTGCAACTGCCTCTCATGCCGTTGCAACCCAAACTCTTTTTGTTGTATACTATAAACCAAGGACAAGTCAATTTATCATAAGCGTGAACAAGTATTTGAATGCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAGAGATTTTCAGGCACTGTTATTGGAGTGGAAGATATTTCTCCTCACTGGGAAAACTCAAGCTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCCGCTGTTCCAAGGCCAGATAAGGTTTCACCATGGGAAGTGGAACCTTCTCTGGCTCCCATCACTTCATCTTCGGTTCAACCTCCTGCTGTAAAGACCAAGAGACCTCGACCACCAAGTGAAATTCCAGATCTTGACACAACTTCCACTGCCTCTGCTTTCTGGAATTCTGAGCTGATGCAACCTGATATTACCCAACTAGGAGTTATGACTGAAAGCAATAGGACTGACAATTCCGGTTTGTGGCATCACAGTCAAGCTGAAATGAATAGTAAAAGCAGCAGCAACAGTCTTTCAAGAAATCAAACAGAAGGGAGTTGGCTATCTTCTCCCCACTCAAGCAGTCCTCCGCAACTGGTGCAGGACACAACAGATGATGGCAAAAGCGTCGCTGCTTGGCCTGTTCACTCAGTTCATCCAACACCTCACTCGTCGCGACTGAACAATGAACATGTGCTTGAACAAGGTGGCAAGGAGCATAAAGTCGAGATTGCTACAAGCTGTCGGTTGTTTGGGATTGAGCTTATTGGTCATTCCCAAAATTCAACTGCTATGGGGAAGGCACCTGCACCTGCAGCTGGTATACTTAACGGCCCTTCTGAAAGTCATGTCAATGCTTTGTCTGGAACTGATACAGACCGTGAGTATAACACCGCAAAGGCTTCCTATGAGGGGAAACAAGAACAGTTGCAAGTAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTCGCAGTGGGTCGTGCTGTGGACTTGGCCATGTTGGATGGTTATGATAATCTTATAGATGAGTTGGAGGAGATGTTTGACATAAAAGGACAACTTAAAGATAGGAAGAAATGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCCGAATTCTGTAGTATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTACGGGAAGCAAACTGCCTATTTCATCACTGGAAGGTGATGGGACTGTAATAAGTGGGAGCACAGCTGAAACCTGA 2088 0.4602 MLNRGGSFSMSSAEGGGGGDDLYEELWKACAGPLVDVPRANERVFYFPQGHMEQLEASTNQELNHRIPVFNLDSKILCRVVNVHLLAEPETDEVYAQITLVPEFNQNEPTSPDPCSAELPRPAVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVVKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRVGVRRHARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLNAINNKFTVGMRFKMRFEGDESPETDKRFSGTVIGVEDISPHWENSSWRSLKVQWDEPAAVPRPDKVSPWEVEPSLAPITSSSVQPPAVKTKRPRPPSEIPDLDTTSTASAFWNSELMQPDITQLGVMTESNRTDNSGLWHHSQAEMNSKSSSNSLSRNQTEGSWLSSPHSSSPPQLVQDTTDDGKSVAAWPVHSVHPTPHSSRLNNEHVLEQGGKEHKVEIATSCRLFGIELIGHSQNSTAMGKAPAPAAGILNGPSESHVNALSGTDTDREYNTAKASYEGKQEQLQVKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLDGYDNLIDELEEMFDIKGQLKDRKKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMSTGSKLPISSLEGDGTVISGSTAET 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1476 695 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Acco11g1476 695 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Acco11g1476 695 FunFam Auxin response factor 578 671 - -
Acco11g1476 695 Gene3D - 579 671 - -
Acco11g1476 695 Gene3D - 124 229 IPR015300 -
Acco11g1476 695 MobiDBLite consensus disorder prediction 359 387 - -
Acco11g1476 695 SMART B3_2 127 229 IPR003340 GO:0003677
Acco11g1476 695 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Acco11g1476 695 CDD B3_DNA 125 227 IPR003340 GO:0003677
Acco11g1476 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco11g1476 695 MobiDBLite consensus disorder prediction 426 465 - -
Acco11g1476 695 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco11g1476 695 SUPERFAMILY CAD & PB1 domains 584 659 - -
Acco11g1476 695 FunFam Auxin response factor 125 229 - -
Acco11g1476 695 Pfam AUX/IAA family 558 667 IPR033389 -
Acco11g1476 695 Gene3D - 288 360 - -
Acco11g1476 695 ProSiteProfiles PB1 domain profile. 583 664 IPR000270 GO:0005515
Acco11g1476 695 FunFam Auxin response factor 288 360 - -
Acco11g1476 695 MobiDBLite consensus disorder prediction 426 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1476 Acco-ChrAcco11 29297161 29300788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1476 18 676 B3 DNA Binding Superfamily AT4G23980 58.832 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco11g1476 B3 2.8e-22 CL0405