Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1378 ATGGCTGCAAAACTCTCCAGTGGAGCGATAATGACGTTGTGTAGAGACGATTTATCTTACGATGACCTGAAGCCTGTGCTTCAAGTGATTGACTTGAAGTTGGTGCAGTCGCAGCAGCATAACAACATCGAGAGGTATAGGCTTGTGCTTTCAGATGGTTCCCATTATCAGCAAGGCATGCTTGCTACTCAGAAGAACGATTTGGTCCATGCGGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTAACTCAGTTCGTCTGTAATTGTGTCCAGAGTCGCAAGATTATCGTCATTATCGAGCTGGAAATGGTCCTTGACAGATGTGATCCCATTGGACAACCTGTCCCGGTGCAGAGAGCTGTACCTGCAGCATCTCCCACTGCATCATCTCTCACTGATCAGTCTGGAGTTACCACAGGAAATCCCCAGTCTTTAACAAGTAACTCATCTGCAGGTGGCAAGATTGCTAGATCTAACACTACTGGTCCATCTCTAGATCATTCACAAATCAATCTTACTGCTAATGGGGCAAAATATGGTGCTGCAAATGCCTCTTCTCCATTTCCTAAAGCAGAGCCTACTTTTCCTAAATCAGAGCCATTCAATGGGTCCTATGGTGAACAGAACATGGGATTTCGGAACTCTCGACCAGAAACTCCAAGACCCCCACAACATGTCTATGTTCATCCACCACAGCCTATGCATAGACAGCCTTCTCCAGTCTACAATAACAGGGGACACATAGGTAGAAATGAAGCTTTCCCAAGGATAATTCCAATAGCTGGATTGAATTCATACTCTAGCATGTGGACAATTAAGGCTAGAGTAACAGCAAAGGCAAGCCTCAGACAGTACCACAATGCCAGAGGTGATGGCAAAGTATTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATTCGAGCAACTTGCTTTAATGCAGTGGCTGAACAATTCTATCATCAAATTGAAATTGGTAAAGTATATCTGATTTCCAAGGGGAGTCTAAAGCCAGCCCAAAAAAATTTTAATCACCTTCCTAATGATCAAGAACTGACCCTTGATATTACATCTACCATACAGCCATGTGATGATGATGAGTCAATTCCAATGCGTCTTTTTAAATTTCGTCCTATTAGTGATGTTGAAAGCATGGAAAATTCAAGCGTTGTAGATGTGATTGGTGTAGTATTTTCTATTAGTCCTACAACTTCAATCATGAGAAAAAATGGTACTGAAACTCATAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGCAGTGTTGAGTTAACCCTATGGGGAGAGTTCTGTAATGCAGTAGGACAACAGTTGCAGAATACTTGTGACTCAGGTGCATTTCCTGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATATCCAATAGTCAGCTATTTATGGATCCTGATCTCCCTGAGGCCTACAGGTTGAGAGAATGGTTTGACAAGGAAGGGAAGAATGCTCCGACTCTTTCTATTTCCAGAGAATCAATCAATGTTGGTAAGACTGATATGAGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCTGAGAAGCCTGACTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGCTGATTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAAGTGTCCAATAACGGAGATGGAAAATGGCGGTGTGAGAGATGTGACCAGTATGTTGATGCATGTGAATATAGGTATATATTGCAACTCCAAATCCAGGACCACACTGGACTAACATGGGCCACTGCATTTCAGGAGGGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTTTATGAAATATGAAGAGCAGGATGATGAAAGATTTGCACAGGTTATCCGTAAGGTTCTATTTGCTAAATACCTATTCAAATTAAAAGTTAAGGAAGAGACTTTTGGTGATGAACAGCGTGTGAAGTCAACAGTAGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAATCAAGATTTGTTTTGGATTTGATTGATAAGCTTAAAGCTCAGAAAGTGGAAGGTATGGATCCTAACTCTGTAATTAGTAATGCCCGACCGCAGAATGCCGGAACTGGCCTGGCTAATCCTATAAAGAGCAATACTGGTGCGAGTAGAGAATATGGGATGCCAGCAAATCAAGTGGGTCAGTATGAACAGCAATATCGGAGTTCATTTGCTTCAGCTGGACCTTCTAGCTTAACTTGCAGCAATTGTGGAGGCTCTGGCCATAACTCTATGCATTGCCCAAATGTTACAAGTGTACCTCGACAGTCCATGGGAGGAGGGGCCTTTGCAAATAGGGTATCTTCAGGGTTAGGTGGTGGTGTTGCCTCTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTCCCAATGCTGCAGCTCCTTCTGCTTATGGAAGTAGTGTTGTTCATGGAGGCAATGGGTTTGTTCAAAGGCAACAGCATGGTGGATTTTGA 2571 0.4302 MAAKLSSGAIMTLCRDDLSYDDLKPVLQVIDLKLVQSQQHNNIERYRLVLSDGSHYQQGMLATQKNDLVHAGRLQKGSVVKLTQFVCNCVQSRKIIVIIELEMVLDRCDPIGQPVPVQRAVPAASPTASSLTDQSGVTTGNPQSLTSNSSAGGKIARSNTTGPSLDHSQINLTANGAKYGAANASSPFPKAEPTFPKSEPFNGSYGEQNMGFRNSRPETPRPPQHVYVHPPQPMHRQPSPVYNNRGHIGRNEAFPRIIPIAGLNSYSSMWTIKARVTAKASLRQYHNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQIEIGKVYLISKGSLKPAQKNFNHLPNDQELTLDITSTIQPCDDDESIPMRLFKFRPISDVESMENSSVVDVIGVVFSISPTTSIMRKNGTETHKRALQLKDMSGCSVELTLWGEFCNAVGQQLQNTCDSGAFPVLAVKAARVNEFNGKALGTISNSQLFMDPDLPEAYRLREWFDKEGKNAPTLSISRESINVGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKADSFCYTACPIMIGDRKCSKKVSNNGDGKWRCERCDQYVDACEYRYILQLQIQDHTGLTWATAFQEGGEEIMGLPAKDLYFMKYEEQDDERFAQVIRKVLFAKYLFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRFVLDLIDKLKAQKVEGMDPNSVISNARPQNAGTGLANPIKSNTGASREYGMPANQVGQYEQQYRSSFASAGPSSLTCSNCGGSGHNSMHCPNVTSVPRQSMGGGAFANRVSSGLGGGVASGECFKCHQTGHWARDCPGPNAAAPSAYGSSVVHGGNGFVQRQQHGGF 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1378 856 SMART c2hcfinal6 765 781 IPR001878 GO:0003676|GO:0008270
Acco11g1378 856 SMART c2hcfinal6 811 827 IPR001878 GO:0003676|GO:0008270
Acco11g1378 856 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Acco11g1378 856 PANTHER REPLICATION FACTOR A 1, RFA1 270 680 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco11g1378 856 FunFam Replication protein A subunit 256 365 - -
Acco11g1378 856 FunFam Replication protein A subunit 368 506 - -
Acco11g1378 856 SUPERFAMILY Nucleic acid-binding proteins 257 369 IPR012340 -
Acco11g1378 856 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Acco11g1378 856 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Acco11g1378 856 Gene3D - 508 698 IPR012340 -
Acco11g1378 856 Gene3D - 3 118 IPR012340 -
Acco11g1378 856 Gene3D - 368 507 IPR012340 -
Acco11g1378 856 Gene3D - 742 837 - -
Acco11g1378 856 SUPERFAMILY Nucleic acid-binding proteins 374 503 IPR012340 -
Acco11g1378 856 Gene3D - 256 366 IPR012340 -
Acco11g1378 856 NCBIfam replication factor-a protein 1 (rpa1) 239 697 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco11g1378 856 FunFam Replication protein A subunit 4 118 - -
Acco11g1378 856 SUPERFAMILY Nucleic acid-binding proteins 521 698 IPR012340 -
Acco11g1378 856 Pfam Zinc knuckle 811 826 IPR001878 GO:0003676|GO:0008270
Acco11g1378 856 SUPERFAMILY Retrovirus zinc finger-like domains 803 830 IPR036875 GO:0003676|GO:0008270
Acco11g1378 856 CDD RPA1_DBD_B 390 497 - -
Acco11g1378 856 ProSiteProfiles Zinc finger CCHC-type profile. 812 826 IPR001878 GO:0003676|GO:0008270
Acco11g1378 856 Pfam Replication protein A OB domain 379 482 IPR031657 -
Acco11g1378 856 CDD RPA1_DBD_C 524 697 IPR047192 -
Acco11g1378 856 ProSiteProfiles Zinc finger CCHC-type profile. 766 781 IPR001878 GO:0003676|GO:0008270
Acco11g1378 856 MobiDBLite consensus disorder prediction 122 169 - -
Acco11g1378 856 MobiDBLite consensus disorder prediction 123 169 - -
Acco11g1378 856 Pfam Replication factor-A C terminal domain 540 689 IPR013955 -
Acco11g1378 856 CDD RPA1_DBD_A 259 362 - -
Acco11g1378 856 FunFam Replication protein A subunit 507 698 - -
Acco11g1378 856 Pfam OB-fold nucleic acid binding domain 270 356 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1378 Acco-ChrAcco11 28100828 28104334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1378 1 792 Core DNA Replication Machinery Family AT5G45400 51.429 0.0 851