Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1353 ATGGCTGCAAATCTCACCGGTGGCGCGATAATGACGATGTGTAGAGACGATTTCTCTTGCGGGGACCTGCAGCCTGTGCTTCAAGTGATTGACTTGAAGTTGATGCAGTCGCAGCAGCATAACAACACGGAGAGGTATAGGCTTGTGCTTTCAGATGGTTCCCATTTCCAGCAAGGGATGCTTGCTACTCCGAAGAACGAATTGGTTCATTCTGGGCGATTGCAGAAGGGCTCTGTTGTTAAGCTGACTCAGTATGTCTGTAATGCCGTCCAGAGTCGCAAGGCTAGGAAATCTGGGATTAGGGACACAGCTGCCTGTAGTTTCTTTCTTTCTCTCATAGCTATGATTGTGTTTTCTCATGGTCTCAACTGTGGGTCATTTGATGATGTGGTTATGTCATTCACTAAAAACAGGATTATCATCATTGTCGAGCTGGATATGATCCTTGACAGATGTGATCCAATCGGAGAACCTGTTGCAGCACCAAGAGCTGTACCTGCTTCATCTTCCACTAATCAGTCTGGATCTACCGCAGGGAACCCCCAGAATTTAACCAGTAATTCACCTGCAGGTGGTCAGATTGCTGGACCAAATGTGGCTCGGCCATCTCTAGATCATCCACAAATCAATCGTACTGCCAATGGTGTCAGATATGGTGCTGCAAATGCCCCTCCTCCATTGCCTAAAGCAGAGCCTAGAGGTTCCCCTACTTTACCTAAGTCAGAGCCATTTAATGGGTCCTATGGTGGACAGAACATGGGATTTAGCAATCCTCCACTAGAAACTTCAATACCCCAACAAAATGTCTATATTCGTCCGCCACAGCCTATGCATAGACAGCCTTCTCCATTCTACAATAACGGGGGACAAATTGGCAGAAATGAATCTTTCCCAAGGATAATTCCAATGGCTGCATTGAATCCATACTCAAGTATGTGGACAATTAAGGCTAGAGTTACAGCAAAGGCTAGCCTCAGACAGTACAGCAATGCCAGAGGTGATGGCAAAGTGTTTTCTTTCGATCTTCTTGATTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCATCAAGTTGAAATTGGTAAAGTATATCTGATTTCCAAGGGGAGTCTAAAGCCAGCTCAAAAAAATTTTAATCACCTCCCAAATGATCATGAACTGACTCTTGATTATACATCCATCATACAGCCATGTGATGATGACAAGTCAATTCCAATGCGTCTTTTTAAATTTCGTCCTATTAGTGATGTTGAAAGCATAGAAAATTCGAGTGTTGTGGATGTGATTGGTGTCGTATTTTCTATCAGTCCTACCACTTCAATCATGAGAAAGAATGGTGCTGAAACTCATAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGTTGCAGTGTTGAGTTAACCCTTTGGGGAGAGTTATGTAATGCAGTAGGACAACAGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGCAAGGCTCTAGGGACCTTATCCAATAGTCAGCTATTTATAGAGCCTGATCTTCCTGAGGCCTACAGGTTGAAAGAATGGTTTGGGAAGGAAGGGAGGAATGCTCCAACTGTTTCTATTTCCAGAGAATCCTTCAATGTTGGTAAGACTGATATGAGGAAGACCATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATTAGCATCTGTGCTAGTGTTTCATTCATTAAGGTGGACTCTTTCTGCTATACAGCCTGTCCCATCATGATAGGGGATAGGAAATGTAGCAAAAAAGTGTCCAATAATGGAGATGGAAAATGGCGGTGCGACAGGTGTGACCAGTATGTTGACGCATGTGAATACAGGTATATACTGCAACTCCAAATACAGGACCACACTGGGCTAACATGGGTTACTGCATTTCAGGAGTGTGGTGGGGAGATAATGGGCTTAACTGCCAAAGATCTATATTATATGAAATATGAAGAGCAGGATGATGAAAGATTTGCGCAAGTTATCCGTAAGGTTCTTTTCACTAAATACCTATTCAAGTTAAAAGTTAAGGAAGAGACTTTTGGTGATGAACAGCGTGTGAAGTTAACAGTAGTGAAAGCAGAGAAGGTGAACTTTTCATCTGAATCAAGATTTGTTTTGGATTTGATTGATAAGCTTAAAGCTGAGAAGTTGGAAGGTATGGATCCTAACTCTGCAATCAGTAGTGCTGGGCCGCAGAATATTGGAACTGGCTTGGCTGTGCCACCAGCTTATAATCCTATAAAGAGCAATAGTAGTGCGAGTAGAGAATATGGGATGCAAGCAAATCAAGTGGGTCAGTATGAACACCAATATAGGAGTTCATTTGCTTCTGCTGGGTCTAGTAGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCACTGCCCAAACATCACAAGTGTATCTCGACAGTCCATGGGAGGAGGGGCCTTTGCAAGTAGGGTATCTTCAGGGGTAGGCGGCGGCGTTTCCTCTGGAGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCAAGAGACTGTCCTGGTTGTTGA 2637 0.4369 MAANLTGGAIMTMCRDDFSCGDLQPVLQVIDLKLMQSQQHNNTERYRLVLSDGSHFQQGMLATPKNELVHSGRLQKGSVVKLTQYVCNAVQSRKARKSGIRDTAACSFFLSLIAMIVFSHGLNCGSFDDVVMSFTKNRIIIIVELDMILDRCDPIGEPVAAPRAVPASSSTNQSGSTAGNPQNLTSNSPAGGQIAGPNVARPSLDHPQINRTANGVRYGAANAPPPLPKAEPRGSPTLPKSEPFNGSYGGQNMGFSNPPLETSIPQQNVYIRPPQPMHRQPSPFYNNGGQIGRNESFPRIIPMAALNPYSSMWTIKARVTAKASLRQYSNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYHQVEIGKVYLISKGSLKPAQKNFNHLPNDHELTLDYTSIIQPCDDDKSIPMRLFKFRPISDVESIENSSVVDVIGVVFSISPTTSIMRKNGAETHKRALQLKDMSGCSVELTLWGELCNAVGQQLQNTCDSGAFPVLAVKAARVNEFNGKALGTLSNSQLFIEPDLPEAYRLKEWFGKEGRNAPTVSISRESFNVGKTDMRKTISQIKDEKLGTSEKPDWISICASVSFIKVDSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQYVDACEYRYILQLQIQDHTGLTWVTAFQECGGEIMGLTAKDLYYMKYEEQDDERFAQVIRKVLFTKYLFKLKVKEETFGDEQRVKLTVVKAEKVNFSSESRFVLDLIDKLKAEKLEGMDPNSAISSAGPQNIGTGLAVPPAYNPIKSNSSASREYGMQANQVGQYEHQYRSSFASAGSSSSFMPCSNCGGSGHSSMHCPNITSVSRQSMGGGAFASRVSSGVGGGVSSGECFKCHQTGHWARDCPGC 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1353 878 MobiDBLite consensus disorder prediction 160 249 - -
Acco11g1353 878 PANTHER REPLICATION FACTOR A 1, RFA1 313 748 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco11g1353 878 SMART c2hcfinal6 861 877 IPR001878 GO:0003676|GO:0008270
Acco11g1353 878 SMART c2hcfinal6 815 831 IPR001878 GO:0003676|GO:0008270
Acco11g1353 878 FunFam Replication protein A subunit 299 408 - -
Acco11g1353 878 SUPERFAMILY Nucleic acid-binding proteins 417 546 IPR012340 -
Acco11g1353 878 Gene3D - 299 409 IPR012340 -
Acco11g1353 878 FunFam Replication protein A subunit 4 96 - -
Acco11g1353 878 Pfam OB-fold nucleic acid binding domain 313 402 IPR004365 GO:0003676
Acco11g1353 878 ProSiteProfiles Zinc finger CCHC-type profile. 862 876 IPR001878 GO:0003676|GO:0008270
Acco11g1353 878 Gene3D - 3 161 IPR012340 -
Acco11g1353 878 CDD RPA1N 8 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Acco11g1353 878 SUPERFAMILY Nucleic acid-binding proteins 300 411 IPR012340 -
Acco11g1353 878 MobiDBLite consensus disorder prediction 165 193 - -
Acco11g1353 878 FunFam Replication protein A subunit 550 741 - -
Acco11g1353 878 Pfam Replication factor-A protein 1, N-terminal domain 5 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Acco11g1353 878 SUPERFAMILY Nucleic acid-binding proteins 1 93 IPR012340 -
Acco11g1353 878 CDD RPA1_DBD_B 433 539 - -
Acco11g1353 878 Pfam Replication protein A OB domain 422 525 IPR031657 -
Acco11g1353 878 CDD RPA1_DBD_A 302 404 - -
Acco11g1353 878 CDD RPA1_DBD_C 567 740 IPR047192 -
Acco11g1353 878 SUPERFAMILY Retrovirus zinc finger-like domains 852 877 IPR036875 GO:0003676|GO:0008270
Acco11g1353 878 Gene3D - 551 741 IPR012340 -
Acco11g1353 878 Gene3D - 411 550 IPR012340 -
Acco11g1353 878 Pfam Zinc knuckle 861 876 IPR001878 GO:0003676|GO:0008270
Acco11g1353 878 SUPERFAMILY Nucleic acid-binding proteins 564 741 IPR012340 -
Acco11g1353 878 FunFam Replication protein A subunit 411 549 - -
Acco11g1353 878 Gene3D - 807 877 - -
Acco11g1353 878 NCBIfam replication factor-a protein 1 (rpa1) 292 740 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Acco11g1353 878 ProSiteProfiles Zinc finger CCHC-type profile. 816 831 IPR001878 GO:0003676|GO:0008270
Acco11g1353 878 Pfam Replication factor-A C terminal domain 583 732 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1353 Acco-ChrAcco11 27790352 27793469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1353 1 842 Core DNA Replication Machinery Family AT5G45400 48.384 0.0 807
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1353 11 27790352 27793469 Acco11g1353 11 27790352 27793469 ECH