Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1340 ATGGCGAGATCCACAACCATCAATTTTCATCATTTTAGTAAACCACTCTGCCCTCACTCTATTGAAAGGAAAATCAATACACCCACCACAACATTAAGCAGATCTACTCTGAAGGTTGCTATTCGAAAGCTCTACGTTCTTGGCGGCTCCTGTTGGAACTATTCAAATGATCCTAATCTTGAATGGGTACCCGGAAGTTGTGAAAATCTAAATCAAGTCAAAGGTTTTGCTGACGATTCTGCTTTCAAAAACCCGCTCCCTGTTGGTTTCTTGGGCCTTTTAGTGATGGAATATGTGGTGACAAGGTCTCGTGTTTTGTTTGTAATTGTTATCTCTGCACTTTCTCTCCAGACTGTTAGATCAATAGATGACGATGCCCAAGCACTTTTGGCACTCAAATCCTCTATTGACGTTCACAATACACTTCCATGGTCACCCGGAAGCAAAAATCTCTGCGAATGGGACGGAGTCAGAGATTGCTTCAATGGCAGAGTCCGGAAGCTAGTGCTTGAGAACTTGAACTTAACAGGTAATTTGGACCCAAAGATCTTGAACCGGTTGGATCAAATTCGAGTACTCAGTTTCAAGAGCAACTCACTGTCTGGTCCAATCCCAGACCTCTCTGCCCTGGTTAATCTCAAATCCATATTTCTCAACGACAACAACTTCTCCGGCGTCTTCCCTGCCTCCATCTCCGGTCTCCACCGCGTTAAAGTCATAGTACTCTCCGGCAACCGACTCTCCGGCAGTATCCCGTCGTCGCTACTCAAACTCCGGCATCTCTACATGCTTTACTTGCAAGACAACTCGTTCACAGGACCCATCCCGGGTTTCAACCAAAGCAGTCTCCGATACCTGAACGTCTCCAACAACCAACTTTCCGGCGAGATCCCAGCGAGCTCGTCATTGATCCGTTTCAATGAGTCGTCGTATTCGGGGAACCCGGGCCTGTGTGGGGAACAGATCCACAAGGCATGCGAAGTGCCTCCGTCGGTAAGCCCGGCTTATCCGTTGGTGCCAAGTAGGATGGAACCTGAACCAAGGTCGTCGTCATCTAACCGGAAGAAAGTGATAAGGATAGTAGGAGGGACCACCGGAGGCTTCGCGGTGCTTGTGATATGCTTGGTTGTAATATGTATGATGTGTAGGAATCAGGGAAAAGAGAAGGGTTCCAGAAGCAGGAAGATAGAAGGAGAAGAGGGGGGAGAAAGAGTGACAGGAGCAGGAACGGGAGGTGAAAGTGGCAGAGGAGGTAATAATGGGGGAAAAGAAGGGGAGTTTTCATGGGAAGACGAGGGACTAGGGAAGTTGGTGTTCTGCGGGACGGGGGATAGTTATCGGTTGGAGGATTTACTGAAGGCGTCGGCGGAGACATTGGGGAGGGGTAGTATGGGAAGCACATACAAGGCAGTGATGGAGTCAGGGTTTATAGTGACGGTGAAGAGGTTGAAGGACGCGAGGTATCCTGGAATGCAGGAATTCTCAGCTCACATAGAGTTGCTAGGCAGGCTTAGGCACCCTAATCTGGTCCCACTTCGAGCTTATTTCCAGGCTAAGGAGGAACGCCTTCTTGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCTCTCGTCCATGGATCAAAAACTTCTGGCGGGGGAAAGCCTCTTCACTGGACATCATGCCTCAAAATTGCCGAAGATCTGGCAACTGGACTTGTGTACATCCACCAGAACCCTGGCCTAACCCATGGCAACCTGAAATCTTCCAATGTGTTGTTGGGTTCGGACTTCGAGTCATGTCTTACAGATTATGGCCTGCAGGTGTTGCTTAATCCAGATTCACTTGAAGAACCCAGCGCCACCACATTATTCTACAGAGCGCCGGAGTGCCGTGGCAACCGAAGCCCTCCTAGTCAGCAAGCCGATGTATACAGCTTTGGGGTACTTGTCCTGGAGCTTTTAACCGGCAAAACACCCTTCCAAGACCTTGTTGTGGAACATGGTTCGGATATACCTAGGTGGGTTCGGTCAGTGCGGGAAGAGGAGACAGAGTCCGGGTCCGGGGATGACCCTGCCTCAGGAAATGACGCCTCAGAAGAGAAGCTTCAAGCTCTTTTAAACATTGCCATGGCTTGTGTTTCACTGGTACCAGAAAACAGACCAACAATGAGACAAGTTTTGAAGATGATAAGAGATGCAAGAGCGGAGGCTCAACTGTCCTCAAACAGCAGTGATCATTCTCCAGGAAGATGGTCAGATACTGTGCAGAGCTTGCCTCGTGAAGAGCATTTGAGCATATGA 2283 0.4897 MARSTTINFHHFSKPLCPHSIERKINTPTTTLSRSTLKVAIRKLYVLGGSCWNYSNDPNLEWVPGSCENLNQVKGFADDSAFKNPLPVGFLGLLVMEYVVTRSRVLFVIVISALSLQTVRSIDDDAQALLALKSSIDVHNTLPWSPGSKNLCEWDGVRDCFNGRVRKLVLENLNLTGNLDPKILNRLDQIRVLSFKSNSLSGPIPDLSALVNLKSIFLNDNNFSGVFPASISGLHRVKVIVLSGNRLSGSIPSSLLKLRHLYMLYLQDNSFTGPIPGFNQSSLRYLNVSNNQLSGEIPASSSLIRFNESSYSGNPGLCGEQIHKACEVPPSVSPAYPLVPSRMEPEPRSSSSNRKKVIRIVGGTTGGFAVLVICLVVICMMCRNQGKEKGSRSRKIEGEEGGERVTGAGTGGESGRGGNNGGKEGEFSWEDEGLGKLVFCGTGDSYRLEDLLKASAETLGRGSMGSTYKAVMESGFIVTVKRLKDARYPGMQEFSAHIELLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLVHGSKTSGGGKPLHWTSCLKIAEDLATGLVYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLQVLLNPDSLEEPSATTLFYRAPECRGNRSPPSQQADVYSFGVLVLELLTGKTPFQDLVVEHGSDIPRWVRSVREEETESGSGDDPASGNDASEEKLQALLNIAMACVSLVPENRPTMRQVLKMIRDARAEAQLSSNSSDHSPGRWSDTVQSLPREEHLSI 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1340 760 Gene3D Ribonuclease Inhibitor 122 279 IPR032675 -
Acco11g1340 760 Gene3D Phosphorylase Kinase; domain 1 444 528 - -
Acco11g1340 760 ProSiteProfiles Protein kinase domain profile. 453 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1340 760 ProSiteProfiles Leucine-rich repeat profile. 282 304 IPR001611 GO:0005515
Acco11g1340 760 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 112 730 IPR046959 -
Acco11g1340 760 MobiDBLite consensus disorder prediction 389 426 - -
Acco11g1340 760 MobiDBLite consensus disorder prediction 669 690 - -
Acco11g1340 760 Pfam Leucine rich repeat N-terminal domain 123 158 IPR013210 -
Acco11g1340 760 SUPERFAMILY L domain-like 123 319 - -
Acco11g1340 760 Gene3D Ribonuclease Inhibitor 280 329 IPR032675 -
Acco11g1340 760 MobiDBLite consensus disorder prediction 731 760 - -
Acco11g1340 760 Pfam Protein kinase domain 456 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1340 760 Gene3D Transferase(Phosphotransferase) domain 1 529 747 - -
Acco11g1340 760 Pfam Leucine rich repeat 212 270 IPR001611 GO:0005515
Acco11g1340 760 SUPERFAMILY Protein kinase-like (PK-like) 457 724 IPR011009 -
Acco11g1340 760 FunFam Nuclear pore complex protein NUP107 122 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1340 Acco-ChrAcco11 27655218 27658474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1340 99 760 Receptor kinase-like Gene Family AT1G60630 59.765 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Acco11g1340 Pkinase 3.7e-36 CL0016