Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1291 ATGCACAACCAACCAATGGGAAGAGGAGAGAGAATGCCCACTGGAAACCGGCATTCACAGGAACCAGAACTCATCGATAACGCCGTCGTTGTGATTTTACACAAATGCCCTTCTAGTTACAGGGATTTGGATATAGTCTGTGATTGTTTTCGCGATTTCTCCTTCAAGTGTGTAAAGACGGAGACGTACAAGGAGCGACTCCGTAATGAAATGGTGGAAAGAAGACTTTCTTTATCTAAGGAAGCTAGAAATGGGCTAGAATTTTTGAAGCGTAAAAGGCTAGAACGGGCAAAACTCATTACTGCCTCTGAAACAACTGTTGCTAGCACAATGACCAGAAGCGGAGGAGATGCTTTAAGAGCTTCATCTTCATGCGGTTTCAGATTGCATGGCAATGCAGATCTCTTCTCCAAGCGTAAGGTGGATAAGTTTGAGACAAGTGATCTTGAATGGATTGAAAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTCTGGTTTACTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAGATTATTTCACCTGTGAGTGCGTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCTCTTCGGCTTGCTGAGTGGGACACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGCAATTATACATTCCGTGAATTTGAGAAAATGGCCAATAGAGTTTTTGCACATAGATATTCTAGTGCTGGAGGTCTTCCTGCCACATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGACAGATGGAAACTGTTGAATATGCATGTGATGTTGAAGGTAGTGCCTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAAAGTTTCACGGCTGCCCAAGTCCATTTTGCGCCTCTTGGAAACAGCAATTCCGGGAGTAACAGAACCTATGCTGTACATTGGAATGCTCTTCAGTATGTTCGCTTGGCATGTGGAAGATCATTATTTGTACAGTATAAATTATCATCACTGTGGTGCATCAAAAACTTGGTATGGCATTCCAGGTCATGCTGCATTGGATTTTGAAAGGGTGGTGAGAGAGCATGTGTACTCTAATGATATTCTTTCTAGTGATGGGGAGGATGGAGCTTTTGATGTTCTTCTGGGGAAAACAACTCTGTTCCCTCCAAATATTTTGTTGGATAATGAAGTCCCTGTCTATAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACTTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGAGCTATTGCTAGCCAGCGATATGCACTTCTTAACAGGATGCCTATGCTGCCTCATGAAGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACAAACTTAGAACTTGAAGATTCAGACTTCACCTCTGCAGATCTGTTGGCTCATAATTGCATAAAGATTTCTTTTGTGAATCTAATGCGCTTCCAACATTGTGCTCGTTGGCTCTTAATGAAATCAAGGGCTTGTTTGACTGTTTTTCCACATTCCCACAGCACAATTCTCTGTAGCATCTGCAAACGTGATTGCTATGTTGCATATGTAGACTGCGAGTGTCACATGCACGCTGTCTGCCTTCGCCATGATATTGAAGCTTTTGGCTTCACCTGTGGGCGAGAGCACACACTTTATGTGAGGGAGGACATTAGTGATCTGGAAGATGCAGCCAAGAGGTTTGAGCAGGGAGATGGAATCGTGGATGAGATTCTAAAGCAAACCAAGGGTGACCATAACATGTATTCATATCCTTTGTCAAATGTGTTCCAAAGAGCTGAAGCAAAGGGATATACTCCTTATTGCGACATAGAATTTGATTTCGTTGTTGAACATTATTCAACCCCAGATCTGGCTAGAAGTAATCCAGAGCGCAATTTACAGAGTCAACTTGTTTTGAGGCACAGCCCAGATTTTAAACCAGAAGTCTGCGAGGCTTCTTTTACTTCTGCTGGATCCACCCTTTATTCTCTTTCAGAACCTATTGATAGGTCTTCTGCTCTCAAAAGTGACGATGGGCATGCTTATTTTACATCATGCTCTGTTGATTCCGAAGGATGTTGTGAAGGATTATTGAATGTCGCATGCCAATCATCAGGGCGCTGTCACGAGATCTCAAGTAAACCTCAGCGCCATCTCGATGAATTAGAGATGACGCCCATTGTGGATAAAGAGGATAGCGATTCTGATTCTGAAATATTTAGGGTGAAGCGGCCATCTTCTCTGAAGGCAGAGAAAAGAAATTTGAACGCTACCATGTCTACCGGGCATTCGGATCCACAGGGGATGAAACGATTGAAGAGAGAGAATGAAGGAAGTAGCTGGACACAGGCAATGGAATGCAGCAGAAGCAATGATTCAATGAAACGGAAAGTGGAGAGTGAAAGATGGGCAAGGGGAAATAGCGTTCAGTCCATATCTGTAACGTATAAGAAGGTGGGCAATGGGGGAGTTAGTAGGGAGCGAGATCACAACAGGAAATACAGGTTCCAGCAGGCAGTTAGGGAACAACGACCTCCCTTTGAGATGGGTTCCAAGAGCCGCCCATCGTTGTTGAGCTTTGCCTCTAAATGGTGA 2727 0.4287 MHNQPMGRGERMPTGNRHSQEPELIDNAVVVILHKCPSSYRDLDIVCDCFRDFSFKCVKTETYKERLRNEMVERRLSLSKEARNGLEFLKRKRLERAKLITASETTVASTMTRSGGDALRASSSCGFRLHGNADLFSKRKVDKFETSDLEWIEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPVSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGSNYTFREFEKMANRVFAHRYSSAGGLPATFLEKEFWHEIACGQMETVEYACDVEGSAFSSSPTDQLGNSKWNLKKVSRLPKSILRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYSNDILSSDGEDGAFDVLLGKTTLFPPNILLDNEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLNRMPMLPHEELLCKEAMLLHTNLELEDSDFTSADLLAHNCIKISFVNLMRFQHCARWLLMKSRACLTVFPHSHSTILCSICKRDCYVAYVDCECHMHAVCLRHDIEAFGFTCGREHTLYVREDISDLEDAAKRFEQGDGIVDEILKQTKGDHNMYSYPLSNVFQRAEAKGYTPYCDIEFDFVVEHYSTPDLARSNPERNLQSQLVLRHSPDFKPEVCEASFTSAGSTLYSLSEPIDRSSALKSDDGHAYFTSCSVDSEGCCEGLLNVACQSSGRCHEISSKPQRHLDELEMTPIVDKEDSDSDSEIFRVKRPSSLKAEKRNLNATMSTGHSDPQGMKRLKRENEGSSWTQAMECSRSNDSMKRKVESERWARGNSVQSISVTYKKVGNGGVSRERDHNRKYRFQQAVREQRPPFEMGSKSRPSLLSFASKW 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1291 908 SMART JmjN_1 157 198 IPR003349 -
Acco11g1291 908 Pfam C5HC2 zinc finger 555 606 IPR004198 -
Acco11g1291 908 ProSiteProfiles JmjC domain profile. 305 475 IPR003347 -
Acco11g1291 908 Pfam jmjN domain 159 191 IPR003349 -
Acco11g1291 908 SUPERFAMILY Clavaminate synthase-like 296 491 - -
Acco11g1291 908 PANTHER LYSINE-SPECIFIC DEMETHYLASE 150 843 - -
Acco11g1291 908 Pfam JmjC domain, hydroxylase 335 458 IPR003347 -
Acco11g1291 908 MobiDBLite consensus disorder prediction 866 883 - -
Acco11g1291 908 Gene3D Cupin 158 514 - -
Acco11g1291 908 SMART cupin_9 302 475 IPR003347 -
Acco11g1291 908 MobiDBLite consensus disorder prediction 794 908 - -
Acco11g1291 908 MobiDBLite consensus disorder prediction 1 21 - -
Acco11g1291 908 MobiDBLite consensus disorder prediction 848 862 - -
Acco11g1291 908 MobiDBLite consensus disorder prediction 795 809 - -
Acco11g1291 908 ProSiteProfiles JmjN domain profile. 158 199 IPR003349 -
Acco11g1291 908 FunFam Lysine-specific demethylase isoform A 153 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1291 Acco-ChrAcco11 27032227 27040028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1291 155 612 JUMONJI Transcription Factor Family AT2G34880 32.833 3.79e-65 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Acco11g1291 JmjC 7.5e-39 CL0029