Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1290 ATGTATGGGGATTGTCAAGTGATGTCAAGCATGGGAGGTAACGTAGTAGTGAACTCAGAAACGCTCTTTACTTCGTCAATCCAAAACTCCAACTTTAACTTCATACCCACCATGCCTTTTCATCAACCTTTCCAACCTCCTCCCATGAAAGAAGAAGATGGGTCAACGATGATGATGAGAGGGAAGGAAGAGATAATGGAGAGTGGGTCAGGAAGCGAACAAGCTGATCAAGAAAAGTCTGGGAACGAACAAGACAGTGAACAGCCAGCCAACAAGAAGAAACGTTACCACAGGCACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGACGACAAGCAAAGGATGAAACTAAGCCAAGAGCTGGGTTTGAAGCCACGCCAAGTCAAGTTCTGGTTTCAAAATCGTCGAACTCAGATGAAGGCTCAACAAGATAGAGCTGATAATGTGATATTGAGAGCAGAAAATGAGAATCTGAAGAATGAGAACTATCGTCTACAAGCAGCATTGCGTAATGTGATGTGTCCTAATTGTGGTGGTCCTGCCATGATGGGTGCTGATCTCGGCATGGACGACCATCACCTTCGCCTTGAAAATGCTCGCCTCAGAGAAGAGCTAGAACGAGTGTGTTGTCTCACATCAAGATACACAGGCCGTGCAATGCAAGCAATGGCATCACCAACAACACCTGCTCTAATGGCTCCTTCGTTGGATTTGGACATGAACATATACTCAAGGCACTTCACCGATCCCGTCGTCTCTTGTACATCGGCTATGATTCCGGTCCCGATGTTGCCTCCTTCGGATCTTACTTCACCATTCCCAGACGGTGGTGGTGGCCTGTTATTGATGGAAGAAGACAAGTCTCTGGCTTTGGAGCTCTCCGTGTCGTCCATGGATGAACTAGTCAAGATGTGTCAGGCAAACGAGCCTCTTTGGATAAGAAACAAAGAGAATGAGAGGGAAATTCTCAATTTTGAGGAACATGCTAGGCTCTTTCATTGGCCTCTCAACCTCAAAAACCATTCCACTGAACTTAGAAGAGAAGCTAGCCGTGACACTGCTATGGTTATAATGAATAGTGTCACTCTTGTTGACGCCTTTCTTGATGCTATTAAGTGGATGGAATTGTTCCCCACCATTGTTTCGAGGGCAAAAACTGTTCAAGTTATATCGTCTGGTGCTTCTGGTCATGCAAGTGGGTCACTTCAACTGATGTACGCAGAATTACAGGTGATATCTCCGTTGGTGCCGACTCGTGAGACTCATTTTCTTCGTTACTGCCAACAAAATGCGGAGGAGGGGACATGGGCAATTGTTGATTTTCCTCTTGATAGCTTCCATGAAAGCTTTCACCATTCTTATCCCAGATATTGCAGGCGACCCTCTGGCTGTATTATTCAAGACATGCCTAATGGGTACTCTAGGGTAACGTGGGTGGAGCATGCAGAGGTGGAAGAGAAACCAGTGCATCAGATATTCAGTAACTATGTGCACAGTGGAATGGCCTATGGAGCACAGCGTTGGTTAGGGGTTTTGCAGAGACAATGTGAGAGGGTCGCCAGCCTCATGGCCAGGAATATTTCAGACCTTGGAGTGATACCGTCGCCGGAAGCCAGAAAGAACTTAATGAAACTGGCTCAAAGAATGATAAGAACGTTCAGCCTGAACATGAGCACGTCGAGTGGGCAATCATGGACGGCGTTATCAGATTCTGCTGAAGACACTGTTAGGATTACAACAAGGAAGATCACAAACCCAGGTCAACCAAACGGGGTCATACTCAGTGCTGTCTCCACCACCTGGCTTCCTTATTCTCACTCCAAGGTCTTTGACCTCCTCAAGGACGAACGTCGAAGATCTCAGTTGGATTTTCTCTCCAATGGCAACTCTTTGCATGAAGTGGCTCATATTGCAAATGGCTCGCATCCAGGAAATTGCATCTCCCTTTTACGCATTAACGTGGCTAGCAACTCATCTCAGAACGTAGAGCTAGTGGTGCAAGAGAGTTGCACCGATCAGTCCGGCAGTCTGGTGGTGTACGCCACCATTGACGTTGAGTCCATCCAGCTCGCCATGTCCGGCGAGGACCCTTCCTCCATAGCACTTCTTCCACAGGGCTTCGTCATAGTTCCGGCGACAAATACAACCTCCAATCCAACTGATTCTGCTGCGGCGGCTACTGCTGGCGGAGGAGGAGCTCCACCACTACCGCCACCTTCTTCTTCTAGTCTAAACCAAGCTTGTCTTCTCACAGTGGGCCTCCAAGTTCTGGCCAGCACCATCCCTTCTGCAAAACTCAACCTCTCCAGCGTCACCGCCATTAACAACCATCTCTGCAACACTCTCCACCAAATCGAAGCCGCTCTTTGCACCGATTATGGCACTTTCGTCGTCGAACCCACCGCTACTTCTACCCCTAATAAGCAGTAG 2454 0.4796 MYGDCQVMSSMGGNVVVNSETLFTSSIQNSNFNFIPTMPFHQPFQPPPMKEEDGSTMMMRGKEEIMESGSGSEQADQEKSGNEQDSEQPANKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNENYRLQAALRNVMCPNCGGPAMMGADLGMDDHHLRLENARLREELERVCCLTSRYTGRAMQAMASPTTPALMAPSLDLDMNIYSRHFTDPVVSCTSAMIPVPMLPPSDLTSPFPDGGGGLLLMEEDKSLALELSVSSMDELVKMCQANEPLWIRNKENEREILNFEEHARLFHWPLNLKNHSTELRREASRDTAMVIMNSVTLVDAFLDAIKWMELFPTIVSRAKTVQVISSGASGHASGSLQLMYAELQVISPLVPTRETHFLRYCQQNAEEGTWAIVDFPLDSFHESFHHSYPRYCRRPSGCIIQDMPNGYSRVTWVEHAEVEEKPVHQIFSNYVHSGMAYGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTALSDSAEDTVRITTRKITNPGQPNGVILSAVSTTWLPYSHSKVFDLLKDERRRSQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELVVQESCTDQSGSLVVYATIDVESIQLAMSGEDPSSIALLPQGFVIVPATNTTSNPTDSAAAATAGGGGAPPLPPPSSSSLNQACLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALCTDYGTFVVEPTATSTPNKQ 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1290 817 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Acco11g1290 817 MobiDBLite consensus disorder prediction 726 748 - -
Acco11g1290 817 SUPERFAMILY Bet v1-like 562 794 - -
Acco11g1290 817 ProSiteProfiles START domain profile. 291 529 IPR002913 GO:0008289
Acco11g1290 817 Coils Coil 149 179 - -
Acco11g1290 817 SMART START_1 300 526 IPR002913 GO:0008289
Acco11g1290 817 Gene3D - 316 522 IPR023393 -
Acco11g1290 817 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Acco11g1290 817 MobiDBLite consensus disorder prediction 78 92 - -
Acco11g1290 817 Gene3D - 77 161 - -
Acco11g1290 817 SUPERFAMILY Homeodomain-like 80 151 IPR009057 -
Acco11g1290 817 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Acco11g1290 817 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 91 797 IPR042160 -
Acco11g1290 817 SMART HOX_1 91 154 IPR001356 GO:0003677
Acco11g1290 817 FunFam Homeobox-leucine zipper protein HDG1 80 166 - -
Acco11g1290 817 CDD homeodomain 93 151 IPR001356 GO:0003677
Acco11g1290 817 Pfam START domain 301 526 IPR002913 GO:0008289
Acco11g1290 817 MobiDBLite consensus disorder prediction 64 100 - -
Acco11g1290 817 CDD START_ArGLABRA2_like 295 525 - -
Acco11g1290 817 SUPERFAMILY Bet v1-like 292 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1290 Acco-ChrAcco11 27000676 27006120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1290 8 797 Homeobox Transcription Factor Family AT5G46880 57.820 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco11g1290 START 7.1e-42 CL0209