Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1283 ATGAGCTTTCAGGATATCGAAGCCGGTCGGCCCTTCGCTACGAGGCGAGACCTAATCAATGGCAAGCAAGACCCTACACAGGCGGTGGCGTCCGGTGTATTCCAGATCAACACAGCTGTGTCCACGTTTCAGAGGCTCGTCAACACCCTCGGTACCCCGAAGGACACGCCCGAACTCCGCGAGAAGCTGCACAAGACGAGGCTGCATATCGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGAAATAGATCACCATGGAGAAGTTAATGCAAGCAAGAAGATAGCAGATGCCAAACTTGCAAAAGACTTTCAGGCAGTTTTGAAAGAGTTTCAGAAGGCCCAACGGCTTGCAGCTGAGAGGGAAACAGCTTACACTTCTTTCGTTCCACAAGCAGTTCTTCCCTCGAGCTATACGGCTAGTGAGATAGATGTCTCTGATAAGAGCCAAGAACAGCTGGCTCTTCTTATTGAGTCCAGAAGGCAGGAGGTCTTGATGTTGGATAACGAGATTGTGTTTAATGAGGCTATCATTGAGGAGAGAGAGCAAGGTATTCAAGAAATCCAGCACCAAATTGGCGAAGTAAACGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCACATGCTGCAACCGCACAAGCGAAATCTCAATTAGTGAAAGCTGCAAAGACCCAAAGATCAAATTCATCTTTGACTTGCTTACTCTTGGTGATCTTTGGAATTGTGCTTCTCATCGTGATCATAATCCTTGCGGCCTAA 819 0.4664 MSFQDIEAGRPFATRRDLINGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHGEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTSFVPQAVLPSSYTASEIDVSDKSQEQLALLIESRRQEVLMLDNEIVFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLIVIIILAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1283 272 CDD SynN 23 148 IPR006011 GO:0016020
Acco11g1283 272 Gene3D - 176 272 - -
Acco11g1283 272 SMART SynN_4 15 127 IPR006011 GO:0016020
Acco11g1283 272 SUPERFAMILY t-snare proteins 23 234 IPR010989 GO:0016020|GO:0016192
Acco11g1283 272 FunFam Syntaxin-22 like 20 133 - -
Acco11g1283 272 PANTHER SYNTAXIN 27 263 IPR045242 -
Acco11g1283 272 SMART tSNARE_6 174 241 IPR000727 -
Acco11g1283 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Acco11g1283 272 Pfam SNARE domain 215 267 IPR000727 -
Acco11g1283 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Acco11g1283 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Acco11g1283 272 FunFam Syntaxin-22 like 172 272 - -
Acco11g1283 272 Gene3D - 20 133 - -
Acco11g1283 272 CDD SNARE_Qa 182 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1283 Acco-ChrAcco11 26895018 26897956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1283 1 260 SNARE and Associated Proteins AT5G46860 78.462 5.17e-147 410
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1283 11 26895018 26897956 Acco11g1283 11 26895018 26897956 ECH