Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1281 ATGGATGGAGAGAACAAGAGCAGTGGAGATGGCGGGGATGTCCAGATGGCGGTTCCGGCACCGCCTCCCATGTCCAACGCGAACGCTCCACCACCGTTTCTTAGTAAGACGTTTGACATGGTGGATGACCCGGTCTCTGATGCGATCGTGTCTTGGAGCTCAACCAATAACAGCTTCGTGGTTTGGAACCCACCAGAGTTTGCCAGAGATCTCTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTCGTCAGGCAGTTGAACACTTATGGTTTTCGAAAGGTGGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTAAGGGGTCAGAAGCACTTGCTTAAGAGTATTACTCGACGAAAACCAGCCCATGGCCATAGTAATCAACAAACACAGAACTCACAGGGACAGAATTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAAGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAACGTGCTCATGCAGGAGCTTGTGAGGTTGAGGCAGCAGCAACAGTCCACTGATAACCAGCTGCAGACAATGGTTCAGCACCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCCAAGGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAGCAGAATGAGAGCAATAGACGCATAACTGAAGCCAACAAAAAACGGCGGCTTAAGCAGGAAGGTATTGCTGAAACAGAATGTGCTACTGCTTCTGATGGACAAATTATCAAGTATCAGCCTCTGATGAATGAAGCAGCAAAAGCAGTGCTAAGGCAGATAATGAAATTGGATACTTCAAGGGTGGAATCTTTTAATAACAACAACCTTGATAATTACTTGATTGGGGATGGTTTATCATCATCCAGTGCAATGGACAGTAGTAGCTCTTCAAGCTGGACTTCTGAAGTTACACTTCAAGAGATCCCACCAACTTCAGTGCAGTCTTCTCACATTCCAGCTGCGTCAGGAACTTCTGGGCCCTCAGCTGATAAGTCCAAAATCCCATCTACAAAAACTGCACCTGCTGCCTCTGCTCCTCAGGCAGATGTCATAATGCCTGAGCTTTCGCCCATACCAGAGATGGTAACAGAAGGTATTCCATCAGTTCCTGAAGGAACTTATGTGAGACCTGCGATGGACAACATGGATCCTACGTCATTGGGAGTGAATGGGTCATTGCCCACTGATGTTGGTAGTTTTTCTCCTGATGCAGACATTGAAGATTTGTTACGCAATCCTTCCTTTTGGGATGATTTTCTTCTGCAAAGTCCAATGCCTGAGGATATCGAGATTAATGCTGCTGAAGCAGTGTCCAATGAAGTGCAGCCAATGGAGGACGGGTGGGAAAAAACTGAGCGCATGAGCCAACTTACAGAGCAGATGGGTCTTCTTTCTTCCGATCCAAGAGCAGGTTGA 1464 0.4672 MDGENKSSGDGGDVQMAVPAPPPMSNANAPPPFLSKTFDMVDDPVSDAIVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGHSNQQTQNSQGQNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQHLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRITEANKKRRLKQEGIAETECATASDGQIIKYQPLMNEAAKAVLRQIMKLDTSRVESFNNNNLDNYLIGDGLSSSSAMDSSSSSSWTSEVTLQEIPPTSVQSSHIPAASGTSGPSADKSKIPSTKTAPAASAPQADVIMPELSPIPEMVTEGIPSVPEGTYVRPAMDNMDPTSLGVNGSLPTDVGSFSPDADIEDLLRNPSFWDDFLLQSPMPEDIEINAAEAVSNEVQPMEDGWEKTERMSQLTEQMGLLSSDPRAG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1281 487 Gene3D - 25 123 IPR036388 -
Acco11g1281 487 FunFam Heat shock transcription factor 1 26 123 - -
Acco11g1281 487 Coils Coil 151 178 - -
Acco11g1281 487 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g1281 487 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g1281 487 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g1281 487 MobiDBLite consensus disorder prediction 121 142 - -
Acco11g1281 487 MobiDBLite consensus disorder prediction 306 365 - -
Acco11g1281 487 MobiDBLite consensus disorder prediction 458 487 - -
Acco11g1281 487 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g1281 487 MobiDBLite consensus disorder prediction 1 31 - -
Acco11g1281 487 MobiDBLite consensus disorder prediction 125 142 - -
Acco11g1281 487 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Acco11g1281 487 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g1281 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 308 IPR027725 -
Acco11g1281 487 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco11g1281 487 MobiDBLite consensus disorder prediction 306 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1281 Acco-ChrAcco11 26890127 26893736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1281 1 481 HSF AT1G32330 52.495 2.89e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco11g1281 HSF_DNA-bind 2.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1281 11 26890127 26893736 Acco11g1281 11 26890127 26893736 ECH