Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1273 ATGGGTAGGGTTCCATGCTGTGAGGAGAATAATGGAGTGAAGAAAGGGCCATGGACAGCAGAAGAAGATGAGAAGCTTATGAAATATATCAGCAAGCAAGGCCATGGAAGTTGGAGGACACTTCCAAAGAAAGCTGGTCTTAATAGGTGTGGCAAAAGCTGCAGGCTGAGGTGGACTAATTATCTGAGGCCTGATATTAAGAGAGGTAAATTCTCTGAAGAAGAAGACCGTATCATCATCAACCTTCATTCTGTTCTGGGAAACAAGTGGTCAAAGATTGCAGGACATCTTCCTGGAAGAACAGATAATGAAATAAAGAACTACTGGAACACCCATATAAGGAAGAAGCTGCTTCAGATGGGAATTGACCCAGAAACTCACAAACCCAGAACTGACTTCAATCACCTCCTCAGTAATCTCTCTCACTTGCTTGGAATCTCTTCATCATCAAACAATATGGGTCCATCATGGGGCAACAACAACAATCCTCTGGTGGTATCTTCACAAGTAGATTTCACTTCTCAGCTTACCAAAATCCAACTTCTCCAAAACCTATTACAAATTGTTAATTCAAACCCTTGCCTCTTAGGCAATAATATTAATAATCATACCCTGAACCCACTTCAAATTCAATCCTTTATGAATGGGACTAATGGTCTATTATTCCCTACTCAAGCACAAGGAGGATCTGGTTTAGAAGGTTTTGGTTTGAATAATGATAGCAATAATATTCATAATATTATTCCGCATCATCAGAGCCATCATCAGTCGGAAATGACATTACCTGCTCTAGTCTTGGCGTCTCCGGTGACCAGCTCAGCCGTGAAGCCAACCGACTGCAATGCAGCTCCAGCATCGTCCACTGATCAGTCACCTAATAATAATTGCTCTTCAGCATTGTTTGAGAGTTGGGAGAATTTCCTGGATGATGAAATGATGACTGGTCCTGACTGGAAGGAGATTCTTGAATTACCATCAACTTTGGCTTCTCCAATCTCGTGGTAG 1005 0.4179 MGRVPCCEENNGVKKGPWTAEEDEKLMKYISKQGHGSWRTLPKKAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEDRIIINLHSVLGNKWSKIAGHLPGRTDNEIKNYWNTHIRKKLLQMGIDPETHKPRTDFNHLLSNLSHLLGISSSSNNMGPSWGNNNNPLVVSSQVDFTSQLTKIQLLQNLLQIVNSNPCLLGNNINNHTLNPLQIQSFMNGTNGLLFPTQAQGGSGLEGFGLNNDSNNIHNIIPHHQSHHQSEMTLPALVLASPVTSSAVKPTDCNAAPASSTDQSPNNNCSSALFESWENFLDDEMMTGPDWKEILELPSTLASPISW 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1273 334 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Acco11g1273 334 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Acco11g1273 334 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Acco11g1273 334 Gene3D - 14 67 - -
Acco11g1273 334 SMART sant 67 115 IPR001005 -
Acco11g1273 334 SMART sant 14 64 IPR001005 -
Acco11g1273 334 FunFam MYB-related transcription factor 14 67 - -
Acco11g1273 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Acco11g1273 334 FunFam Transcription factor MYB39 70 131 - -
Acco11g1273 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Acco11g1273 334 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Acco11g1273 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Acco11g1273 334 CDD SANT 70 113 IPR001005 -
Acco11g1273 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Acco11g1273 334 CDD SANT 17 62 IPR001005 -
Acco11g1273 334 Gene3D - 69 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1273 Acco-ChrAcco11 26800960 26802954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1273 1 323 MYB Transcription Factor Family AT5G16770 46.491 2.51e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco11g1273 Myb_DNA-binding 1.3e-15 CL0123