Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1266 ATGGATTATGGTAGAGATGGGAACGTCGTTCAAATAATCACCGGTGGCGGTGGAAATGAAAACTGGTCCAGTGACCAGGCCGTTTGGGCGACGGAAGACGATTATCGATTCTGGAACAACGGGGACGCCGACACTCCCTCGGACTCGAATTACGATCAAAGGCAGTCCCAATCACGATCTGGGAGCGAACCCCCAAATAAGAAATCTAGGAATTCTCAGGATGCGACTTCATTGAATCGGTCCAAAACTATTGGGAAAATGTTCTTCAAGACTAAACTGTGTTGCAAATTCCGGGCCGGTACGTGTCCTTATATCACTAATTGCAATTTCGCCCACAGTGTTGAAGAGCTTCGTCGGCCACCGCCGAATTGGCAAGAAATTGTGGCTGCTCATGAAGAGGAAAAATCCATAATGTCAGAACCAAGAGAAGAGTTTCAAATTCCGTCCATTGGGTCGTCCGGGTTTGCTGGGGAGATGCAGAGAGCGTATAAAGGTCGCCATTGCAAGAAGTTTTACACGGAAGAAGGATGCCCATATGGAGATAATTGTACATTTCTTCATGACGAACAATCTAGGAATCGTGAGAGTGTGGCTATAAGTTTAGGTCCTGGTGGGTATGGTGGTGCTGGCAATGGCTCTAATTCCAAGCCATCAAATTGGAAAACACGGATTTGCAATAAATGGGAGATGACTGGGTATTGCCCATTTGGAAATAAATGCCATTTTGCTCATGGCGCTGCAGAGTTGCACCGATATGGCGGGGGGGCTATGGAGGGAGAAAATAGAGACCCTGCATCTGCTACTGCTCCTGACACGAAGCAGGGCGGGGTGCCTTCAAAAACGCCTTTTGATAACGTCATTTCATCGGTCACTCCTGTGGCTCATCCAGATGTCTATCATATCGGAGTTCCTTCACAAAGGTCTTCCATTGTGATTCAGAGGCCAGGCCAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGAGTTGGAATGA 1026 0.4717 MDYGRDGNVVQIITGGGGNENWSSDQAVWATEDDYRFWNNGDADTPSDSNYDQRQSQSRSGSEPPNKKSRNSQDATSLNRSKTIGKMFFKTKLCCKFRAGTCPYITNCNFAHSVEELRRPPPNWQEIVAAHEEEKSIMSEPREEFQIPSIGSSGFAGEMQRAYKGRHCKKFYTEEGCPYGDNCTFLHDEQSRNRESVAISLGPGGYGGAGNGSNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGAMEGENRDPASATAPDTKQGGVPSKTPFDNVISSVTPVAHPDVYHIGVPSQRSSIVIQRPGQRAHQKWKGPDKISRIYGDWIDELE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1266 341 MobiDBLite consensus disorder prediction 35 77 - -
Acco11g1266 341 Gene3D - 156 202 - -
Acco11g1266 341 SUPERFAMILY CCCH zinc finger 217 250 IPR036855 GO:0046872
Acco11g1266 341 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Acco11g1266 341 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Acco11g1266 341 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Acco11g1266 341 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Acco11g1266 341 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Acco11g1266 341 PANTHER CCCH ZINC FINGER/TIS11-RELATED 212 268 IPR045877 GO:0003729
Acco11g1266 341 Gene3D - 83 119 - -
Acco11g1266 341 Gene3D - 212 251 - -
Acco11g1266 341 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Acco11g1266 341 MobiDBLite consensus disorder prediction 200 219 - -
Acco11g1266 341 FunFam Zinc finger CCCH domain-containing protein 84 120 - -
Acco11g1266 341 FunFam Zinc finger, CCCH-type 156 194 - -
Acco11g1266 341 FunFam zinc finger CCCH domain-containing protein 15-like 213 252 - -
Acco11g1266 341 MobiDBLite consensus disorder prediction 255 281 - -
Acco11g1266 341 MobiDBLite consensus disorder prediction 42 77 - -
Acco11g1266 341 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Acco11g1266 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Acco11g1266 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872
Acco11g1266 341 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
Acco11g1266 341 SUPERFAMILY CCCH zinc finger 162 190 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1266 Acco-ChrAcco11 26615260 26618959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1266 221 249 C3H Transcription Factor Family AT1G68200 62.069 2.88e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco11g1266 zf-CCCH 1.1e-10 CL0537