Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1263 ATGGCTGCTATTGGAAACCCAAAAACTTGGATCCCCTATGTGAATATCAGAGATTGCTCTCAAGGTTTTTGCAGTGTTTACTGTCCACAATGGTGTTACATAGTTCTTCCTCCTCCTCCTCCTCCTGCCGCCGTAGATTTCCCTCAAGACGACGATTCTTCCCAAAATTTCTCTCCTCTCGTTATAGCCATAATTGGGATCTTGGCCAGTGCCTTTCTTCTGGTAAGTTACTACACTTTCATATCCAAGTACTGTGGAAACAGGGGAGGATCTTCTGACAGGGAGGACAGTCTTCATCACCAGAATGATGAGATTGAAGATAATCACAACCCTTCGCTGCATGAGCCCTGGCATGTCCAAACCAATGGATTAGATGAAGCTCTGATAAAGTCAATTACAGTTTGTAAGTACAAAAGAGGAGATGGCTTGGTTGGTGTCACAGATTGCTCTGTTTGTCTCAGTGAGTTTCAAGAAGATGAACATGTCAGACTTTTGCCTAAATGCAGTCACGCTTTTCACCTCCCCTGTATTGATCAATGGCTCAAATCTCACTCTAATTGCCCTCTCTGCCGTTCTCTTATCTTCACCTTCAATAATTCCTCAACCCCTCAAGTGATGGTTCCACCTGTGATACAAGAATCAGAATCTTCCTCTAGAAATAATGAATCTTCTTCTTCTTCAAGGGAGATTCAGAATGCGAGTGAAGAAAATGGAGTTGGGGTTGGAAGAAGAAGCGGTGAAACAGTTGGGGTTGTGGAAGAAAGTCCGAAGCCGGCGTTGCGAGCTTTAAGTGATCTGGGTTTTCTGAGAGGGAGGCATCGAATGATTGAGATGATAAGAGATGAAGCGGATGAAGAAGATGAAGCCATAAGAAGATCAGTGTCCATGGATCATCATTCTCTGCAAATTGGAGGAGTAGCAATAGGATCAAACGAAGCAAGTACTTCAAAGAGATCATCACAAGGAGAAAGTAGCAAATCTAGTAGCAGAAGAAGAGTATTTCTGCATTGTGTTTTGAGTCCAATCACAATGAAGAGATCATTTTCCAGTGGAAGATTCTCGTTTCGCAGAAATGGCAGAGGAAGGCAGGGAATTATCCCTGTTTGA 1107 0.4318 MAAIGNPKTWIPYVNIRDCSQGFCSVYCPQWCYIVLPPPPPPAAVDFPQDDDSSQNFSPLVIAIIGILASAFLLVSYYTFISKYCGNRGGSSDREDSLHHQNDEIEDNHNPSLHEPWHVQTNGLDEALIKSITVCKYKRGDGLVGVTDCSVCLSEFQEDEHVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRSLIFTFNNSSTPQVMVPPVIQESESSSRNNESSSSSREIQNASEENGVGVGRRSGETVGVVEESPKPALRALSDLGFLRGRHRMIEMIRDEADEEDEAIRRSVSMDHHSLQIGGVAIGSNEASTSKRSSQGESSKSSSRRRVFLHCVLSPITMKRSFSSGRFSFRRNGRGRQGIIPV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1263 368 MobiDBLite consensus disorder prediction 211 234 - -
Acco11g1263 368 SMART ring_2 149 190 IPR001841 -
Acco11g1263 368 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Acco11g1263 368 PANTHER RING-H2 FINGER PROTEIN ATL16 41 334 IPR044600 GO:0016567|GO:0016740
Acco11g1263 368 FunFam RING-H2 finger protein ATL54 124 197 - -
Acco11g1263 368 SUPERFAMILY RING/U-box 148 199 - -
Acco11g1263 368 MobiDBLite consensus disorder prediction 307 328 - -
Acco11g1263 368 Pfam Ring finger domain 148 191 IPR001841 -
Acco11g1263 368 MobiDBLite consensus disorder prediction 211 253 - -
Acco11g1263 368 MobiDBLite consensus disorder prediction 307 330 - -
Acco11g1263 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 197 IPR013083 -
Acco11g1263 368 CDD RING-H2_EL5-like 148 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1263 Acco-ChrAcco11 26578817 26579923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1263 6 368 C3H Transcription Factor Family AT5G17600 41.053 1.48e-68 218