Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1262 ATGTCATTTTTTCATCCTGATCTAAGGCCTCTGATTCAATCTGCTCTGGTGTCTTTTTGGTGCAGTCCGGAGGACGACGCCATTGCATCCAATCCTTTTTATAAATGGACACACAGAAAATATCCAACTCTAGCATTATCCGGTTTCTTCGTCCTCCCGAGTCCTTACTGTCAATCAATGGCCGCTTTAGAATCAGGACTCACAGTCTTGGGATCTTTCCGCTATTTTAACAAGTACTCTTCACCTACAAAACCATTCTATTCGATAAAGCTCAACGTCTCCACTTCTCTTTTTCCCATTTCCCACAATTGCGTTGCCCCCTCAATTTTATCTTCCATCGACTCCAGCGCAAGACTCTGCTTCGAATTATGCTCTGCTCTGCAAGAGGCGGCAACAGAAGAGAAACCAGAGCAAACCCAGGAAACTACCAACATAAAAAAGAAGCTCTTTGTATTTAATCTACCATGGTCGTTATCGGCCGTGGACATCAAAAACCTCTTTGGTCAATGCGGAACTGTAATCGATGTCGAGATAATAAAGACCAAAGATGGGAAGAGCAGAGAATTTGCCTTCGTCACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTATTGATAAATTTGACTCTCATGAATTGTCTGGCAGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCACGCCCTCCTCAAACTCCCCCTGCTGGTGAAACAAGCCATAAGATTTACGCTTCGAATCTTGCATGGAAAGCAAGGTCTAGCCATCTCAGAGCATTCTTCACAGAGAATTTCAAACCACCAGTTTCGGCCAGGGTCGTCTTCGACACCCCTAATGGAAGATCTGCTGGCTATGGATTTGTTTCTTTTGCTACAAGGGATGAAGCAGAGGCCGCCATTTCTACACTGGATGGGAAGGAATTAATGGGACGACCACTTCGCCTAAAATTCAGTGAAAGAACTGTTAAAGAATCTGGAGATGAGAAAGGGGAAGAGCAAGGTACTGATGATGAACCGGCTGAACCATAG 1038 0.4499 MSFFHPDLRPLIQSALVSFWCSPEDDAIASNPFYKWTHRKYPTLALSGFFVLPSPYCQSMAALESGLTVLGSFRYFNKYSSPTKPFYSIKLNVSTSLFPISHNCVAPSILSSIDSSARLCFELCSALQEAATEEKPEQTQETTNIKKKLFVFNLPWSLSAVDIKNLFGQCGTVIDVEIIKTKDGKSREFAFVTMASGEEAQAAIDKFDSHELSGRIIRVELAKRFKKPPPPRPPQTPPAGETSHKIYASNLAWKARSSHLRAFFTENFKPPVSARVVFDTPNGRSAGYGFVSFATRDEAEAAISTLDGKELMGRPLRLKFSERTVKESGDEKGEEQGTDDEPAEP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1262 345 SMART rrm1_1 245 319 IPR000504 GO:0003723
Acco11g1262 345 SMART rrm1_1 148 220 IPR000504 GO:0003723
Acco11g1262 345 SUPERFAMILY RNA-binding domain, RBD 227 324 IPR035979 GO:0003676
Acco11g1262 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 323 IPR000504 GO:0003723
Acco11g1262 345 PANTHER OS02G0815200 PROTEIN 128 321 - -
Acco11g1262 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 224 IPR000504 GO:0003723
Acco11g1262 345 MobiDBLite consensus disorder prediction 320 345 - -
Acco11g1262 345 SUPERFAMILY RNA-binding domain, RBD 134 231 IPR035979 GO:0003676
Acco11g1262 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 217 IPR000504 GO:0003723
Acco11g1262 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 317 IPR000504 GO:0003723
Acco11g1262 345 CDD RRM_SF 149 220 - -
Acco11g1262 345 Gene3D - 125 226 IPR012677 -
Acco11g1262 345 Gene3D - 227 339 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1262 Acco-ChrAcco11 26564585 26569188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1262 148 331 Eukaryotic Initiation Factors Gene Family AT4G34110 26.500 6.57e-13 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1262 11 26564585 26569188 Acco11g1262 11 26564585 26569188 ECH