Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1251 ATGACAGACTATAGGTCGCCGCCGACGATGAATCTTTGGACCGATGATAATTCCTCCGTTATGGACGCTTTCCTGAGCTCCGATCTATCTGTACTCTGGCCTAATCCGCCTCAGCCCCAATCCTCTGCTTCCACTACTACTCCTGGACCCGACCCGACCAAGCCTCTCTCTCACTCTCAATCTTCGGCTGCTCTCTTCAATCAAGAAACCCTACAGCAGCGTCTTCAGACCTTGATTGAAGGTGCTAGGGAGAGCTGGACCTACGCTATCTTTTGGCAAGCGTCGTACGACTACTCCGGTGCGTCTTTGCTCGGCTGGGGCGATGGGTACTATAAAGGAGAGGAAGATAAAGGAAAAGGGAAGGCCAAAACGCTGTCGTCTGTGGCAGATCAGGAGCACCGGAAGAAGGTTCTACGCGAGCTTAATTCCCTCATTTCTGGATCCTCTGCCCCCAACGATGATGCAGTGGACGAAGAAGTCACCGATACAGAGTGGTTCTTTCTTGTTTCCATGACTCAATCGTTTGTCAACGGTGATGGGTTACCGGGTCAGGCTTTCTACAATTCCTCACCGGTCTGGATCACTGGTGGGGAGAGGCTGACAGCTTCGACTTGTGAAAGAGCGAGACAGGGCCAGCTGTTCGGGCTTCAGACTTTGGTTTGTATACCGTCGGCCAACGGTGTGGTGGAGCTGGGATCCACTGAATTGATTTTCCAGAACTCAGATCTGATGAATAAAGTGAAAATATGGTTCAATTTCAACAATCCAGATATTGGTTCGTGGCCTCTCATGAATACTAACGCGGATCAAGGTGAGAGCGACCCTTCATCACTTTGGCTTAACGAAATTGAAATCAGAGATTCGACCAACAATACTGTTCCGGCTTCGGTTCCGAGCTCAATTAACAGTCACAACACTAAGCCAATTCAGTTTGAAGCCCCAGTTTCGAGTAATTTAATTGAAACCCCATCGAGTACTTTAACTACTTTAACTGAAGCGCCTAGTGTTGTTCATGTACCGAATACTCAATATGGTAACCAGCAACGGCGACAGCCACAACAATCGCAGAACCAGGGGTTCTTCTCGAAAGAGAAAGAGTTGAACTTTTATGTATTCGACGGAAACGGCCTAAAGAATGGGAATATGCATTCCTTGAAACCCGAATCAGGTGAAATTTTGAACTTCGGGGAGAGCAAGAGGAACTCTTATGGTGGAAATGGGAATTTCTTTACAGGACAGAGTACATTCGTTGCAGAAGACAACAAAAAAAGGAGGTCGCCTACTTCCAAGGGTAGTAACGATGAAGGGATGCTCTCGTTCACTTCTGGTGTGAATTTGCCTGCTTCTAATATGAAATCTAGCGGTGGCGGCGATTCCGATCACTCGGATCTTGAAGCTTCCGTGGTAAGGGAAGCGGATAGTAGCGGAGTAGTAGAGCTAGAAAAACGACCTCGCAAGAGAGGACGAAAGCCAGCTAATGGCAGGGAGGAGCCTCTGAATCACGTTGAAGCAGAGAGGCAGAGAAGAGAGAAGCTGAATCAGAGGTTCTACGCACTTCGTGCAGTGGTTCCAAACGTGTCAAAAATGGACAAAGCATCCCTGCTAGGCGACGCCATATCTTACATCAACGAGCTCAAAACGAAGCTCCAGAGTCTAGAATTAAGCAATAATGATTTACACAAGCAGCTGGATTCAGTCAAGAAGGAACTCGAGGTGGCCACTAGTAAAGATTCTCGTACGCCTCCTCCACCAGATAAGGAACAAAAGACTTCCAACAACAGCCAAGTAAACGGCAAGCTAATAGATTTAGACATCGATGTGAAAATCATAGGTTGGGATGCAATGATTCGAATCCAATGTAGCAAGAGGAATCATCCAGCAGCAAGGTTGATGGCTGCTTTACAGGAGCTAGACCTGGAAGTGAACCACGCAAGTGTGTCAGTAGTGAATGATCTGATGATCCAACAAGCAACAGTAAAGATGGGAAGTCGATTTTACACGCAGGAGCAGCTCCGGCTAGCTCTTACATCCAAGGTTGGAGATGTCCGATGA 2052 0.4756 MTDYRSPPTMNLWTDDNSSVMDAFLSSDLSVLWPNPPQPQSSASTTTPGPDPTKPLSHSQSSAALFNQETLQQRLQTLIEGARESWTYAIFWQASYDYSGASLLGWGDGYYKGEEDKGKGKAKTLSSVADQEHRKKVLRELNSLISGSSAPNDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSSPVWITGGERLTASTCERARQGQLFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVKIWFNFNNPDIGSWPLMNTNADQGESDPSSLWLNEIEIRDSTNNTVPASVPSSINSHNTKPIQFEAPVSSNLIETPSSTLTTLTEAPSVVHVPNTQYGNQQRRQPQQSQNQGFFSKEKELNFYVFDGNGLKNGNMHSLKPESGEILNFGESKRNSYGGNGNFFTGQSTFVAEDNKKRRSPTSKGSNDEGMLSFTSGVNLPASNMKSSGGGDSDHSDLEASVVREADSSGVVELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKTKLQSLELSNNDLHKQLDSVKKELEVATSKDSRTPPPPDKEQKTSNNSQVNGKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALQELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALTSKVGDVR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1251 683 MobiDBLite consensus disorder prediction 431 457 - -
Acco11g1251 683 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 499 565 IPR036638 GO:0046983
Acco11g1251 683 MobiDBLite consensus disorder prediction 475 506 - -
Acco11g1251 683 MobiDBLite consensus disorder prediction 568 584 - -
Acco11g1251 683 MobiDBLite consensus disorder prediction 31 61 - -
Acco11g1251 683 MobiDBLite consensus disorder prediction 414 506 - -
Acco11g1251 683 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 496 545 IPR011598 GO:0046983
Acco11g1251 683 MobiDBLite consensus disorder prediction 568 595 - -
Acco11g1251 683 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Acco11g1251 683 Gene3D - 488 575 IPR036638 GO:0046983
Acco11g1251 683 Pfam Helix-loop-helix DNA-binding domain 500 545 IPR011598 GO:0046983
Acco11g1251 683 PANTHER MYC 60 678 IPR045084 GO:0003700|GO:0006355
Acco11g1251 683 SMART finulus 502 551 IPR011598 GO:0046983
Acco11g1251 683 CDD bHLH_AtAIB_like 493 569 - -
Acco11g1251 683 Coils Coil 542 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1251 Acco-ChrAcco11 26344540 26346591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1251 1 680 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.620 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g1251 bHLH-MYC_N 5.7e-56 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1251 11 26344540 26346591 Acco11g1251 11 26344540 26346591 ECH