Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1238 ATGTCTCCACCGCTGCTGGTTGCTGAGGAGGAGGGGCAGAGCAATATTTCAACATTAGCATCTTCACCATCCTTGGACTCTATCTCCCATAATGGAACTGCTTTAAAAGAGCGCAATTACTTGGGATTGTCTGATTGTTCATCATCCGTTGACAGTTCTAATGTCCCAAGCATGTCAGATGAGAAAAAGGACAACATGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTTCCTGGATCCCTGTCTCCTGAAAGGGATTCAGATTTTTATGCATCAAACTCAACAGAGCTTGATGAGAAACCGCTATTTCCTTTGCTTCCTACAAAAGATGGAATCTGCTCATCATCCCAAAAAACTGTGGTTTCAGGAAACAAGAGAGGTTTCTCTGACACAATGGAGGGTTTTCCAGAGGGAAATTTTACTGGTAATTCAGGGATAAATGTAAGGTTGCCCAGATCTTCCGGTCCTCAGCCAGCCTTTATGAAAGAAATGCCTGCCAAAGTTCCACAGGAACAGCCTTCTCCTGCGAATGGCCTTAGTCATAATCATACGGGTGCTCCTGCTAATGGCAGTGCACCAGCTGCTAAGGCGCAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCCAGTACTTCAAAGAACAATGATGAAGTTGATGGAAAACCCGGTCCTGCCACCCTCTTTGTGAAGGTTAGCATGGATGGCGCTCCTTATTTAAGGAAGGTAGATCTAAGGAATTATACAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGCGGTTCTCATGGTGCTCCAGGCAGAGAAATGTTAAGTGAGAGCAAGCTGAGGGATCTTCTACACGGTTCTGAGTTTGTTCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTTCCATGGGGGATGTTCATCGACACATGCAAGAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGCCCCGAGAGCTATGGAAAAATCCAAGAGCAGGATCTAA 1056 0.447 MSPPLLVAEEEGQSNISTLASSPSLDSISHNGTALKERNYLGLSDCSSSVDSSNVPSMSDEKKDNMNLKATELRLGLPGSLSPERDSDFYASNSTELDEKPLFPLLPTKDGICSSSQKTVVSGNKRGFSDTMEGFPEGNFTGNSGINVRLPRSSGPQPAFMKEMPAKVPQEQPSPANGLSHNHTGAPANGSAPAAKAQVVGWPPIRSYRKNSLASTSKNNDEVDGKPGPATLFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEFVLTYEDKDGDWMLVGDVPWGMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1238 351 MobiDBLite consensus disorder prediction 44 67 - -
Acco11g1238 351 FunFam Auxin-responsive protein 226 343 - -
Acco11g1238 351 Pfam AUX/IAA family 71 342 IPR033389 -
Acco11g1238 351 MobiDBLite consensus disorder prediction 166 197 - -
Acco11g1238 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Acco11g1238 351 MobiDBLite consensus disorder prediction 11 26 - -
Acco11g1238 351 MobiDBLite consensus disorder prediction 116 149 - -
Acco11g1238 351 MobiDBLite consensus disorder prediction 173 187 - -
Acco11g1238 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Acco11g1238 351 Gene3D - 228 344 - -
Acco11g1238 351 MobiDBLite consensus disorder prediction 1 26 - -
Acco11g1238 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Acco11g1238 351 MobiDBLite consensus disorder prediction 44 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1238 Acco-ChrAcco11 26144569 26147912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1238 235 341 B3 DNA Binding Superfamily AT4G23980 29.907 2.55e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco11g1238 AUX_IAA 6.1e-90 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1238 11 26144569 26147912 Acco11g1238 11 26144569 26147912 ECH