Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1230 ATGGAGCTTACTCAACTCAGTTTTCTGGAGGAACTACTAGCTCCAAGAAGAGACACTTGGAGCACTTTTCCCTCTGGCTTGGAAGAGATATTCCCCTACAATGATTGGAGTTTTGATTCTTTTGTTGAGAACCCACCTGTAGCTCCTTTGAATCCTCCATTACCCTCATTTCCCACTCCACTAGACCCTAGATTTGAGGGTCCATACACTAATGAAGCAGAAGCAGCATACCCATTTGTTGATGGCTTCACTTTAACAGAGCTCAACCCTTCATATGCCAGGAATGAAGATTGTGCACTGTTTCCTGCACAAGAAAGTAACCTATCAATGGAGGATGAAGAGTTTGTCTTTATCGGGGGAAGTGGAAATCAGAGCCTTGAAGGCAAGAACACTACCATCTGCAAAATTGAGGAACAGGTCACAGAAGTTCCAGTCTTTAACATGGGTTTGTGTGGGGAGAAAAAACCCAAGTCCAGGAAGCTTGAAGGTCAGCCCTCTAAGAATCTAATGGCTGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGCCTCTCCATGCTAAGGTCTATTGTTCCTAAGATCAGCAAGATGGACAGAACCTCTATTCTTGGGGACACCATAGATTATATGAAAGAGCTTCTAGAAAGGATCGGTAAGCTGCAAGAAGAAAGAACGGAAGAGACTGCAAATCAGATAAATTTCCTGGGTAAATCCAAAGAGATGAAGCCAAATGAAGTGATGGTAAGAAATTCACCCAAGTTTGAGGTAGAGAAGGGAGACCAGGACACAAAAGTCAGTATCTGTTGTGGCACAAGGGCTGGATTGTTGCTATCAACAGTGAACACACTTGAAGCATTAGGCCTTGAGATTCAACAATGTGTTGTAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTATCTGAGCAGAGAACTGGCTTTAGCTCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCCGGTTATGGTGGGAGATGTCTATAG 1011 0.4342 MELTQLSFLEELLAPRRDTWSTFPSGLEEIFPYNDWSFDSFVENPPVAPLNPPLPSFPTPLDPRFEGPYTNEAEAAYPFVDGFTLTELNPSYARNEDCALFPAQESNLSMEDEEFVFIGGSGNQSLEGKNTTICKIEEQVTEVPVFNMGLCGEKKPKSRKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEERTEETANQINFLGKSKEMKPNEVMVRNSPKFEVEKGDQDTKVSICCGTRAGLLLSTVNTLEALGLEIQQCVVSSFNDFSMQASCSEVSEQRTGFSSEEIKQALFRNAGYGGRCL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1230 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Acco11g1230 336 SMART finulus 169 218 IPR011598 GO:0046983
Acco11g1230 336 Gene3D - 171 246 IPR036638 GO:0046983
Acco11g1230 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 226 IPR036638 GO:0046983
Acco11g1230 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 128 330 - -
Acco11g1230 336 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Acco11g1230 336 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1230 Acco-ChrAcco11 26058367 26059669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1230 154 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.667 1.01e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g1230 HLH 7.1e-10 No_clan