Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1217 ATGGGCAGAGGGAAGATTGAGATCCGAAGGATCGATAATTCAACGAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAAGGGGTTGATCAAGAAGGCCAAAGAGCTAACAATCCTGTGTGATGCACAAGTTGGACTCGTCATATTCTCCAGCACTGGAAAGCTTTATGAATATTCAAACACCAGCATGAAATCAGTGATAGAGAGGTATAACACAAGCAAGGAGGAACACCAGCAACTGCTGAATCCAAATTCAGAAGCCAAGGCAAATGATGGGAGAACAGCTTTATGGTTTAAGCATGAAAAACCTACAAGATCTCGAGAACAAGCTGGAAATGAGTGTCAGATGTATTCGCTTGAGAAAGAAGAAATCCGAGAGCTGAATCAAAAGGTAAACAGTATTCATCAGGAAAACCTGGAACTCTATAAGAAGGTAGACCTCCTTCAACAAGAAAACACACAACTGTACAATAAGCATGATCTAATTCAAAAATTTCAAGCAGAAAGCCCGCCAAACCACGTTAAATCGATGCAACCGAGGGGCGAAATGAGAAGAAGATACAGGGGAGAAAAGGACATGATTCATGAACAGGTGAAGAAGATCACATTCAAGCCTACCTGA 618 0.4175 MGRGKIEIRRIDNSTSRQVTFSKRRKGLIKKAKELTILCDAQVGLVIFSSTGKLYEYSNTSMKSVIERYNTSKEEHQQLLNPNSEAKANDGRTALWFKHEKPTRSREQAGNECQMYSLEKEEIRELNQKVNSIHQENLELYKKVDLLQQENTQLYNKHDLIQKFQAESPPNHVKSMQPRGEMRRRYRGEKDMIHEQVKKITFKPT 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1217 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco11g1217 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Acco11g1217 205 MobiDBLite consensus disorder prediction 167 191 - -
Acco11g1217 205 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Acco11g1217 205 Coils Coil 116 143 - -
Acco11g1217 205 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Acco11g1217 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco11g1217 205 MobiDBLite consensus disorder prediction 177 191 - -
Acco11g1217 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco11g1217 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco11g1217 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco11g1217 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco11g1217 205 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Acco11g1217 205 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Acco11g1217 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1217 Acco-ChrAcco11 25786484 25798486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1217 1 157 MADS-box Gene Family AT4G37940 54.971 1.49e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco11g1217 SRF-TF 2.1e-24 No_clan