Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1209 ATGGGCAGAGGGAAGATTGAGATCCAAAGGATCGATAATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAAGGGATTGATCAAGAAGGCCAAAGAGCTAGCAATCCTGTGTGATGCACAAGTTGGACTCGTCATATTCTCCAGCACTGGAAAGCTTTATGAATATTCAAACACCAGCATGAAATCAGTGATAGAGAGGTATAACACAAGCAAGGAGGAACACCAGCAACTGCTGAATCCAAATTCGGAAGCCAAGTTTTGGCAAAGGGAGGCAGAAGTATTAAGGCATCAACTACAAGCCCTACAAGGAAACCATCGGCAAATGATGGGGGAACAACTTTATGGTTTAAGTGTGAATAACCTACAAGATCTCGAGAACCAGCTGGAAATGAGTGTCAGATGTATTCGTATGAAAAAGGGAAACAGTATACATCAGGAAAACCTGGAACTTGATGAGAAGGTAGACCTCGTTCGACAAGAAAACACACAACTGTACAAGAAGGTTTATGGCACATCAGAAATGGCAGCTACAAGCAGAGATGCATTCAATCCATATGGATTTAATACCGGAAAGGACCCACAAGAACTGATCCAACTGCAGCTAAGCCAGCCAGAGCAAGACACACATGAGACATCAGGCAGTGCCTCAAAATAA 660 0.4303 MGRGKIEIQRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYSNTSMKSVIERYNTSKEEHQQLLNPNSEAKFWQREAEVLRHQLQALQGNHRQMMGEQLYGLSVNNLQDLENQLEMSVRCIRMKKGNSIHQENLELDEKVDLVRQENTQLYKKVYGTSEMAATSRDAFNPYGFNTGKDPQELIQLQLSQPEQDTHETSGSASK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1209 219 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Acco11g1209 219 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Acco11g1209 219 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Acco11g1209 219 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco11g1209 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco11g1209 219 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Acco11g1209 219 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco11g1209 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco11g1209 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco11g1209 219 Coils Coil 86 106 - -
Acco11g1209 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco11g1209 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco11g1209 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco11g1209 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Acco11g1209 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1209 Acco-ChrAcco11 25638637 25646960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1209 1 219 MADS-box Gene Family AT4G37940 65.909 4.33e-96 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco11g1209 K-box 2.4e-20 No_clan