Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1194 ATGAAGAAAAGTAATTCCTTCATTTGGTGGTTTGGAATAACTGCGCAGTTTTGCTTCTTGCTTTTCTTTGGTTTCTCTGAGGGTTCCACCTCAATTAGAAGAGCTTTACTGAAGAATAACCTCACACAAGCGTCATCTTCTCCTGCGGTCAAGCTAGATCAAATTCAAAACCAGGTCGTGATAGATAATGGAATCGTCCAAGTAACGTTTTCCAAACCAGAAGGCTACGTCCTTGCAATATCCTACAATGGAATTGACAATGTACTCGAAGCTCAAAACCAAAATAATAATAGAGGGTATCTTGACGTTGTTTGGGGTACTGATGATGAAGGTTTTCAGAAAATCGAGGGGACCAAGTTCTCAGTCGTAGAAAAGACCGAAGATCAAGTGGAAGTTTCATTTTTAAGAGAATGGACACATTCCATGAACGGATCTGTCCCTATAAAAATAGACATGAGGTACATAATGCGAAGAGGCAACTCGGGATATTACTCGTACGCAATATTTGAGCGGCCAGAAGGATTTCCAGCAGCGCAGGTTTTTCAGATCAGGCTGGCTTATAAGCTCCGACAAGACAAGTTCCACTATATGGCTATATCAAGTAAGAGGCAAAGAGTAATGCCAACAGTTGAGGATAGAAACAGTGGACAGCAACTGGCTTATCCTGAAGCTGTTCTCTTGACCAATGCTAAGAATCCAAGAATTAGAGGAGAGGTGGATGATAAATATCAGTACTCGGCGGAGAACAAAGACAACTGCGTTCATGGATGGATTGGCTTTGATACTGAACCACACACGGGTTTCTGGGTTATAGCGCCAAGTAACGAGTTTCGTCATGCTGGGCCCCACAAGCAGGATCTCACTTCTCATGTTGGCCCCATCTCTCTTGCTATGTTTGTGAGCACTCACTACGCCGGATCAAGTGTGTCAATTAATTTTGAGGAAGGGGAGACCTACAAGAAGGTGTTTGGCCCTATTTTTGTCTATCTCAACTCTGCTCCTGGCCAGGATGATTTAGACTTGCTCTGGTCAGACGCTGTTCGACAGTTCAACAAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCCCATAAACGAGGAACAGTAAATGGACAATTACGAGTCCGAGATTGGTTCAAGAAGGGATGGGGAATCATAAATGCTAAGTTTGCTTATGTTGGTTTAGCTCTGCCTGGAGAAAATGGATCGTGGCAGAGAGAAAGCAAGGGTTATCAATTCTGGACTCAAGCTGATAAGAATGGCTACTTTGAAATCAAATATGTTATACCAGGAGACTATAATTTCTACGCCTGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGCTACAATTACCATCAAACCAGGCGGCGTCATTAACTTGGGTTCACTCGTATATAGTCCTCCAAGGAATGGTCCTACCATATGGGAAATTGGTGTCCCAGATCGCTCAGCCGGAGAGTTATACATACCAGACCCTGACCCTAAGCTCGTGAACAGACTGTACCAGAACGATACAAGAAACTGGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAATGTTAGCGTCCATAAGCATGACAAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGAAAGAAAATCAAACATACCAACCAACAACATGGCAGATTAAATTCGAACTTAACGATGACACATCATCAGGAAACTACACGCTTCAAGTAGCCTTATCATCAGCAAATGACGCCAAGTTGCAGGTTTGGTTCAATGATGCGAGAGACGTTGATCCGCACTTTGAGACAGAGAGGACGGGAAGAGACAATGCAATAGCGAGGCATGGCATTCATGGATTGTATAGTTTGATCAGTGTTGAGGTACCAAGTGATCGATTTAAAAAAGGAAACAATATTATCTATTTGAAGCAGTCAGAAGCCTCAGGCTCATTCCAAGGTGTTTTGTATGATTATCTCCGTTTAGAAAGTCCTCCAATTACTGGAAGGATGTGA 2043 0.4263 MKKSNSFIWWFGITAQFCFLLFFGFSEGSTSIRRALLKNNLTQASSSPAVKLDQIQNQVVIDNGIVQVTFSKPEGYVLAISYNGIDNVLEAQNQNNNRGYLDVVWGTDDEGFQKIEGTKFSVVEKTEDQVEVSFLREWTHSMNGSVPIKIDMRYIMRRGNSGYYSYAIFERPEGFPAAQVFQIRLAYKLRQDKFHYMAISSKRQRVMPTVEDRNSGQQLAYPEAVLLTNAKNPRIRGEVDDKYQYSAENKDNCVHGWIGFDTEPHTGFWVIAPSNEFRHAGPHKQDLTSHVGPISLAMFVSTHYAGSSVSINFEEGETYKKVFGPIFVYLNSAPGQDDLDLLWSDAVRQFNKEVRSWPYDFPRSPDFILPHKRGTVNGQLRVRDWFKKGWGIINAKFAYVGLALPGENGSWQRESKGYQFWTQADKNGYFEIKYVIPGDYNFYAWVPGFIGDYRYNATITIKPGGVINLGSLVYSPPRNGPTIWEIGVPDRSAGELYIPDPDPKLVNRLYQNDTRNWFRQYGLWERYTDLYPEKDLVYNVSVHKHDKNWFFAHVARRKENQTYQPTTWQIKFELNDDTSSGNYTLQVALSSANDAKLQVWFNDARDVDPHFETERTGRDNAIARHGIHGLYSLISVEVPSDRFKKGNNIIYLKQSEASGSFQGVLYDYLRLESPPITGRM 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1194 680 CDD RGL4_C 484 672 - -
Acco11g1194 680 CDD RGL4_M 372 472 IPR029413 -
Acco11g1194 680 Gene3D - 479 672 - -
Acco11g1194 680 Pfam Rhamnogalacturonate lyase family 42 239 IPR010325 -
Acco11g1194 680 SUPERFAMILY Starch-binding domain-like 369 470 IPR013784 GO:0030246
Acco11g1194 680 SUPERFAMILY Galactose-binding domain-like 479 672 IPR008979 -
Acco11g1194 680 Pfam Polysaccharide lyase family 4, domain III 482 671 IPR029411 -
Acco11g1194 680 CDD RGL4_N 57 339 - -
Acco11g1194 680 Gene3D - 49 347 IPR014718 GO:0030246
Acco11g1194 680 Pfam Polysaccharide lyase family 4, domain II 397 468 IPR029413 -
Acco11g1194 680 Gene3D - 370 470 - -
Acco11g1194 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1194 Acco-ChrAcco11 25387424 25395173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1194 46 675 Polysaccharide Lyase AT1G09910 53.375 0.0 678
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1194 11 25387424 25395173 Acco12g0548 12 4945627 4951113 CCT