Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1169 ATGCTCTTAGAAACTGATTCTGATTTCGTCATCGTCTCTGAGTCTCGTGCTTCTCTCTGTTGGGCGAATCTGAAGTCGCAGGCTGATTACTATGGTCAAGTAGAGCAAAACCAAAGTGCAGAGGGCTTGAGGGGCCCACAAAATCAGAACGACGGCGTACCGAAACTAGAAGATTTTCTGGGCTACGCCGATAGCCAGACGGAGACGCAAGATTCGTCGCTGACGCAGATATACGAGCATGGCGGCGGCGGTTACTTCGGCGACCCGCAAGATCTGAAAGCAATAGCTGGGTTTCAAGCTTTTTCTACAAACTCCGGCTCGGAGGTGGAGGACTCGGCGTCCATGGCCAAGACTGCTCATCAGGCTGCTTGTGGGGAGTTCGCTATCGAGTCTTCCGGTAACGACGTGGCGTTCTCTGGCTGCACCGCCACGGGTGCTCTGTCTCTCGGCGTCGCTCAAAGTCGCGAGAAAGCCATTGTTGCGGTGGATTCTGGTAGCTCAAAGAAAGTTGCAGATACTTTTGGTCAGCGAACTTCAATCTACAGAGGCGTTACAAGACACCGGTGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGTTGCAGAAGAGAAGGTCAGGCAAGGAAAGGACGTCAAGGTGGTTATGACAAAGAAGACAAGGCTGCGAGGTCTTATGATTTGGCTGCTCTCAAGTATTGGGGTCCGACTGCTACCACCAACTTTCCTGTTTCGAATTACGCAAAGGAATTGGAGGAAATGAAACATGTAACAAAGCAAGAATTCATTGCTTCACTGAGAAGGAAAAGTAGCGGTTTTTCGAGAGGAGCTTCTATTTACAGGGGCGTAACAAGGCATCATCAGCAAGGTCGATGGCAAGCAAGAATAGGTCGCGTTGCAGGAAACAAAGATCTATACCTTGGAACATTTGCAACTGAAGAAGAAGCAGCAGAGGCATACGATATTGCAGCCATTAAATTCAGAGGTGCAGGTGCAGTGACCAACTTTGAGATGAGCAGATATGATGTGGAAGCTATTATGAAGAGTACTCTTCCTGTTGGTGGATCAGCCAAACGAACAAAACATTCCCCAGAAGAATCAGAACACAATAATATTCCTCTTCCTAGTAATATCATCCACTACCAGCAGCCTCAATATCATCCAAACACCATTAATACTAACGTTGGCACTATCAGTTTCACACCCATTCAACCTTCACTTGCTGCTTCTATCCCTTGTGCCATTCCCTATGATTCTGCAGCTGCACATCATTACCACCCTAATCTCCTGCACCATTTTTATCCTACTAGCAACTCTCCGACTGTGGATTCGTCTGCCGTATCTGTGGCCTCTGCTCCGATGAATGCCCTGCCGGCCGCTGCTGCTGAGTTTTTTCTGTGGCCTCATCAGCCATGTTGA 1419 0.4848 MLLETDSDFVIVSESRASLCWANLKSQADYYGQVEQNQSAEGLRGPQNQNDGVPKLEDFLGYADSQTETQDSSLTQIYEHGGGGYFGDPQDLKAIAGFQAFSTNSGSEVEDSASMAKTAHQAACGEFAIESSGNDVAFSGCTATGALSLGVAQSREKAIVAVDSGSSKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGAGAVTNFEMSRYDVEAIMKSTLPVGGSAKRTKHSPEESEHNNIPLPSNIIHYQQPQYHPNTINTNVGTISFTPIQPSLAASIPCAIPYDSAAAHHYHPNLLHHFYPTSNSPTVDSSAVSVASAPMNALPAAAAEFFLWPHQPC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1169 472 SUPERFAMILY DNA-binding domain 179 245 IPR016177 GO:0003677
Acco11g1169 472 Gene3D AP2/ERF domain 279 339 IPR036955 GO:0003700|GO:0006355
Acco11g1169 472 Gene3D AP2/ERF domain 180 245 IPR036955 GO:0003700|GO:0006355
Acco11g1169 472 ProSiteProfiles AP2/ERF domain profile. 279 337 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 ProSiteProfiles AP2/ERF domain profile. 180 243 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 FunFam AP2-like ethylene-responsive transcription factor ANT 179 245 - -
Acco11g1169 472 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 371 - -
Acco11g1169 472 SMART rav1_2 279 343 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 SMART rav1_2 180 249 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 Pfam AP2 domain 279 329 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 Pfam AP2 domain 180 235 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 PRINTS Ethylene responsive element binding protein signature 319 339 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 SUPERFAMILY DNA-binding domain 278 339 IPR016177 GO:0003677
Acco11g1169 472 CDD AP2 278 339 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 CDD AP2 179 245 IPR001471 GO:0003700|GO:0006355
Acco11g1169 472 FunFam AP2-like ethylene-responsive transcription factor 278 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1169 Acco-ChrAcco11 24913051 24917673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1169 53 470 AP2-EREBP Transcription Factor Family AT5G10510 56.364 1.55e-152 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco11g1169 AP2 6.3e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1169 11 24913051 24917673 Acco12g0570 12 5138502 5142596 CCT